Factsheet for VIT_19s0085g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

cytosol 2
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0085g00880.t01	Wine grape	plastid	70.0	63.4
VIT_19s0085g00870.t01	Wine grape	cytosol	64.79	63.08
AT1G79440.1	Thale cress	mitochondrion	68.75	62.5
Bra035119.1-P	Field mustard	mitochondrion	67.92	61.51
CDX88542	Canola	mitochondrion	68.12	59.13
CDX87380	Canola	mitochondrion	67.92	59.06
VIT_17s0000g07660.t01	Wine grape	cytosol	18.96	36.55
VIT_17s0000g07650.t01	Wine grape	peroxisome	37.5	35.79
VIT_14s0066g02410.t01	Wine grape	cytosol, peroxisome, plastid	35.83	34.54
VIT_14s0066g01550.t01	Wine grape	mitochondrion	35.83	32.15
VIT_01s0137g00080.t01	Wine grape	cytosol	26.25	31.82
VIT_01s0026g00220.t01	Wine grape	mitochondrion	36.04	31.74
VIT_17s0000g08070.t01	Wine grape	mitochondrion	35.21	31.41
VIT_11s0037g00070.t01	Wine grape	cytosol	27.5	26.61
VIT_01s0026g00210.t01	Wine grape	cytosol	32.5	26.58
VIT_04s0008g05810.t01	Wine grape	cytosol	26.88	26.01
VIT_03s0132g00200.t01	Wine grape	mitochondrion	28.54	25.42
VIT_11s0016g00900.t01	Wine grape	cytosol	26.88	25.39
VIT_09s0002g01010.t01	Wine grape	cytosol	23.33	24.78
VIT_05s0077g01060.t01	Wine grape	vacuole	26.67	21.59
VIT_03s0132g00230.t01	Wine grape	cytosol	19.58	16.26
VIT_00s0218g00070.t01	Wine grape	cytosol	28.12	9.78

Protein Annotations

EntrezGene:100257122	wikigene:100257122	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.2.2.1	InterPro:Ald_DH/histidinol_DH
InterPro:Ald_DH_C	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	ProteinID:CCB48980	ProteinID:CCB48980.1
UniProt:F6H9T7	EMBL:FN595503	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004777
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	GO:GO:0006540	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009408	GO:GO:0009416	GO:GO:0009450	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009628	GO:GO:0009987	GO:GO:0016491	GO:GO:0016620	GO:GO:0051287
GO:GO:0055114	GO:GO:0072593	InterPro:IPR016162	InterPro:IPR016163	EntrezGene:LOC100257122	wikigene:LOC100257122
PFAM:PF00171	ScanProsite:PS00687	PANTHER:PTHR43353	PANTHER:PTHR43353:SF5	SUPFAM:SSF53720	TIGR:TC62427
TIGR:TC64447	UniParc:UPI0002108D35	ArrayExpress:VIT_19s0085g00860	EnsemblPlantsGene:VIT_19s0085g00860	EnsemblPlants:VIT_19s0085g00860.t01	RefSeq:XP_002265354
RefSeq:XP_002265354.1	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:23325968..23339448

Molecular Weight (calculated)

51424.7 Da

IEP (calculated)

6.707

GRAVY (calculated)

0.168

Length

480 amino acids

Sequence
(BLAST)

001: MDPQSAIAQV KRAGLFRTQG LIGGKWMDAY DGKTFEVYNP ATGEVLANVA CMGKKEANDA IASAHAAFTS WSKLTTAERS KLMRKWYDLL IAHQTELGQL
101: ITLEQGKPVA EGYNEVLIGA SCLEFFLEEV KHCYGDIIPQ TQADRRMFVL KQPVGVVGAI TPWNLPLAMA LRKVSPAMAC GCTVVIKPSE LTPLSALAVA
201: ELALQAGIPP GVFNMVMGFA PEIGDAFLAS PKVRAITFTG STAVGKMLLA GAAQTVKKTS MELGGNAPSM IFDDADLEVT VKGLMIVKFF NCGQTCISPN
301: RILVQEGIHD KFAAALTKAV QTLRVGHGFD EGVTQGPLIN QAALHKGAKV LVGGKRHSLG LTFYEPTVLV DVTSDMLISS TEIFGPVLAL QRFKTEEEAI
401: HLANDSNAGL AGYIYTENLR RCWRVAEAIE FGIVGVNDGL IPAASAPFGG FKQSGLGREG SKYGLDDFLE IKYLCLGNMV

Best Arabidopsis Sequence Match ( AT1G79440.1 )
(BLAST)

001: MVIGAAARVA IGGCRKLISS HTSLLLVSSQ CRQMSMDAQS VSEKLRSSGL LRTQGLIGGK WLDSYDNKTI KVNNPATGEI IADVACMGTK ETNDAIASSY
101: EAFTSWSRLT AGERSKVLRR WYDLLIAHKE ELGQLITLEQ GKPLKEAIGE VAYGASFIEY YAEEAKRVYG DIIPPNLSDR RLLVLKQPVG VVGAITPWNF
201: PLAMITRKVG PALASGCTVV VKPSELTPLT ALAAAELALQ AGVPPGALNV VMGNAPEIGD ALLTSPQVRK ITFTGSTAVG KKLMAAAAPT VKKVSLELGG
301: NAPSIVFDDA DLDVAVKGTL AAKFRNSGQT CVCANRVLVQ DGIYDKFAEA FSEAVQKLEV GDGFRDGTTQ GPLINDAAVQ KVETFVQDAV SKGAKIIIGG
401: KRHSLGMTFY EPTVIRDVSD NMIMSKEEIF GPVAPLIRFK TEEDAIRIAN DTIAGLAAYI FTNSVQRSWR VFEALEYGLV GVNEGLISTE VAPFGGVKQS
501: GLGREGSKYG MDEYLEIKYV CLGDMNRH

Arabidopsis Description

ALDH5F1Succinate-semialdehyde dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.