CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43670	Soybean	mitochondrion	96.09	96.09
GSMUA_Achr5P26830_001	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	52.89	79.55
PGSC0003DMT400044163	Potato	plastid	75.98	79.53
Solyc09g090700.1.1	Tomato	plastid	76.35	78.54
AT1G79440.1	Thale cress	mitochondrion	74.86	76.14
VIT_19s0085g00880.t01	Wine grape	plastid	75.05	76.04
Bra035119.1-P	Field mustard	mitochondrion	73.74	74.72
KXG29578	Sorghum	mitochondrion	71.32	72.68
Zm00001d053776_P015	Maize	mitochondrion	70.95	72.3
TraesCS6A01G155500.1	Wheat	mitochondrion	70.58	72.05
TraesCS6B01G183600.3	Wheat	mitochondrion	70.39	71.86
CDX88542	Canola	mitochondrion	73.93	71.79
CDX87380	Canola	mitochondrion	73.74	71.74
TraesCS6D01G145400.4	Wheat	mitochondrion	70.76	70.24
VIT_19s0085g00870.t01	Wine grape	cytosol	64.43	70.18
Os02t0173900-01	Rice	mitochondrion	38.55	66.77
HORVU6Hr1G031480.15	Barley	mitochondrion	67.04	64.86
KRH48414	Soybean	peroxisome	15.64	42.42
KRH03318	Soybean	mitochondrion	33.33	39.69
KRH54453	Soybean	endoplasmic reticulum	35.94	38.37
KRH48412	Soybean	nucleus	35.75	38.32
KRH39268	Soybean	nucleus	35.57	38.12
KRH57015	Soybean	endoplasmic reticulum	34.64	38.11
KRH54419	Soybean	nucleus	37.43	37.22
KRH74615	Soybean	mitochondrion	36.87	36.8
KRH45689	Soybean	nucleus	36.69	36.75
KRG99327	Soybean	mitochondrion	36.69	36.75
KRH48410	Soybean	cytosol	34.26	36.73
KRH39270	Soybean	cytosol	34.26	36.73
KRH69545	Soybean	mitochondrion	36.69	36.55
KRH41586	Soybean	nucleus	34.08	36.53
KRH60293	Soybean	nucleus	34.08	36.45
KRH20324	Soybean	mitochondrion	35.94	35.74
KRH39267	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	33.89	35.2
KRH41589	Soybean	nucleus	32.96	35.05
KRG93347	Soybean	peroxisome	34.45	35.04
KRH63505	Soybean	mitochondrion	28.86	34.91
KRH60295	Soybean	mitochondrion, plastid	32.77	32.71
KRH05288	Soybean	cytosol	26.63	28.83
KRH10621	Soybean	cytosol	27.75	28.82
KRH72280	Soybean	cytosol, nucleus	25.88	27.97
KRH03077	Soybean	cytosol, nucleus	25.88	27.97
KRH49851	Soybean	mitochondrion	27.56	27.56
KRH42067	Soybean	mitochondrion	27.56	27.36
KRH12550	Soybean	mitochondrion	25.51	26.97
KRH37502	Soybean	endoplasmic reticulum	25.33	26.72
KRH36977	Soybean	endoplasmic reticulum, extracellular, vacuole	28.31	26.03
KRH21731	Soybean	cytosol	15.08	25.96
KRH11951	Soybean	endoplasmic reticulum	28.49	25.63
KRH50740	Soybean	endoplasmic reticulum	28.31	25.46
KRH02344	Soybean	endoplasmic reticulum	27.75	25.0
KRH45519	Soybean	nucleus	27.19	14.56

Protein Annotations

EntrezGene:100808318	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.2.2.1	UniProt:A0A0R4J5H1	EMBL:ACUP02009787
InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom
EnsemblPlantsGene:GLYMA_15G263500	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009013
GO:GO:0009056	GO:GO:0009450	GO:GO:0009987	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114
InterPro:IPR016162	InterPro:IPR016163	EnsemblPlants:KRH13776	ProteinID:KRH13776	ProteinID:KRH13776.1	PFAM:PF00171
ScanProsite:PS00070	ScanProsite:PS00687	PANTHER:PTHR43353	PANTHER:PTHR43353:SF5	SUPFAM:SSF53720	InterPro:Succ_semiAld_DH
TIGRFAMs:TIGR01780	UniParc:UPI0001CDD6E5	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:49664672..49682418

Molecular Weight (calculated)

57644.7 Da

IEP (calculated)

8.352

GRAVY (calculated)

-0.034

Length

537 amino acids

Sequence
(BLAST)

001: MAALNLCRMA LRSSKLLSRP YHRLSVQLQM QMQPSSPPLT RKMSMDAQSV ASQLNSSGLL RTQGLIGGKW SDAYDGKTIK VYNPATGESI VDVACMGGRE
101: TNDAISAAYD AYGSWSKTTA AERSKFLRKW YDLLMVHKEE LAQLITLEQG KPLKESVGEI NYGAGFIEFA AEEAKRIYGD IIPAPLSDRR LFVLKQPVGV
201: VGAITPWNFP LAMITRKVGP ALACGCTVVI KPSELTPLTA LAAAELSIQA GIPPGVVNVV MGNAPDIGDA LLASPQVRKI TFTGSTAVGK KLMAGSAETV
301: KKVSLELGGN APCIVFDDAD LDVAVKGTLA AKFRNSGQTC VCANRIIVQE GIYEKFANAL RDTVQNMKVG DGFSEGVAQG PLINEAAVKK VESLIHDATS
401: KGAKVILGGK RHSLGFTFYE PTVISDVNSD MRISREEAFG PVAPLLRFKT EEDAIRIAND TNAGLGSYIF TNSIQRSWRV AEALEYGLVG VNEGVISTEV
501: APFGGFKQSG LGREGSKYGM DEYLEIKYVC LGNMHKA

Best Arabidopsis Sequence Match ( AT1G79440.1 )
(BLAST)

001: MVIGAAARVA IGGCRKLISS HTSLLLVSSQ CRQMSMDAQS VSEKLRSSGL LRTQGLIGGK WLDSYDNKTI KVNNPATGEI IADVACMGTK ETNDAIASSY
101: EAFTSWSRLT AGERSKVLRR WYDLLIAHKE ELGQLITLEQ GKPLKEAIGE VAYGASFIEY YAEEAKRVYG DIIPPNLSDR RLLVLKQPVG VVGAITPWNF
201: PLAMITRKVG PALASGCTVV VKPSELTPLT ALAAAELALQ AGVPPGALNV VMGNAPEIGD ALLTSPQVRK ITFTGSTAVG KKLMAAAAPT VKKVSLELGG
301: NAPSIVFDDA DLDVAVKGTL AAKFRNSGQT CVCANRVLVQ DGIYDKFAEA FSEAVQKLEV GDGFRDGTTQ GPLINDAAVQ KVETFVQDAV SKGAKIIIGG
401: KRHSLGMTFY EPTVIRDVSD NMIMSKEEIF GPVAPLIRFK TEEDAIRIAN DTIAGLAAYI FTNSVQRSWR VFEALEYGLV GVNEGLISTE VAPFGGVKQS
501: GLGREGSKYG MDEYLEIKYV CLGDMNRH

Arabidopsis Description

ALDH5F1Succinate-semialdehyde dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.