CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41589	Soybean	nucleus	90.15	96.04
KRH48412	Soybean	nucleus	75.46	81.04
KRH39268	Soybean	nucleus	75.28	80.84
KRH41586	Soybean	nucleus	74.16	79.64
KRH60293	Soybean	nucleus	73.23	78.49
KRH48414	Soybean	peroxisome	28.25	76.77
KRH39267	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	72.49	75.44
KRH48410	Soybean	cytosol	69.7	74.85
KRH39270	Soybean	cytosol	69.14	74.25
PGSC0003DMT400000852	Potato	cytosol	65.24	70.2
Solyc12g007030.1.1	Tomato	cytosol	64.87	69.8
GSMUA_Achr6P04810_001	Banana	cytosol	55.39	69.3
Os01t0591000-01	Rice	cytosol	64.31	68.92
TraesCS3A01G417200.1	Wheat	cytosol	63.94	68.8
GSMUA_Achr5P24920_001	Banana	cytosol	64.31	68.65
TraesCS3D01G412700.2	Wheat	golgi	63.57	68.4
AT3G24503.1	Thale cress	peroxisome	63.57	68.26
TraesCS3B01G452100.1	Wheat	golgi	63.2	68.0
KXG32803	Sorghum	cytosol	63.01	67.66
Bra001952.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	63.01	67.66
CDX94807	Canola	cytoskeleton, cytosol, peroxisome	63.01	67.66
CDX93017	Canola	cytoskeleton, cytosol, peroxisome	63.01	67.66
TraesCS1B01G321900.1	Wheat	peroxisome	61.9	67.27
TraesCS1D01G310100.1	Wheat	peroxisome	61.71	67.07
HORVU0Hr1G028680.4	Barley	peroxisome	52.42	66.98
TraesCS1A01G310600.1	Wheat	peroxisome	61.71	66.94
HORVU1Hr1G068020.1	Barley	cytosol	62.08	66.93
HORVU0Hr1G031700.1	Barley	cytosol	61.9	66.73
HORVU3Hr1G092680.2	Barley	mitochondrion, peroxisome, plastid	64.87	66.48
TraesCS3A01G212300.1	Wheat	peroxisome	61.71	66.0
EES00989	Sorghum	cytosol	61.34	65.48
Zm00001d044340_P001	Maize	cytosol	61.9	65.17
Os01t0591300-01	Rice	cytosol	60.97	64.69
Zm00001d011259_P001	Maize	cytosol	60.59	63.67
TraesCS7B01G259100.1	Wheat	peroxisome	60.04	62.96
TraesCS7D01G353900.1	Wheat	peroxisome	60.22	62.91
KXG20268	Sorghum	cytosol	60.78	62.76
TraesCS7A01G369400.1	Wheat	unclear	59.11	61.75
TraesCS7B01G259200.1	Wheat	peroxisome	58.74	61.6
TraesCS7D01G354000.1	Wheat	peroxisome	58.55	61.4
Zm00001d036933_P001	Maize	cytosol	60.78	61.35
TraesCS7A01G369300.1	Wheat	peroxisome	60.78	58.81
HORVU7Hr1G085120.2	Barley	mitochondrion	60.22	58.06
KRH03318	Soybean	mitochondrion	46.84	55.88
Zm00001d044339_P003	Maize	cytosol, peroxisome, plasma membrane	58.36	53.86
KRG99327	Soybean	mitochondrion	52.79	52.99
KRH45689	Soybean	nucleus	52.79	52.99
KRH74615	Soybean	mitochondrion	52.04	52.04
KRH69545	Soybean	mitochondrion	52.04	51.95
KRH54419	Soybean	nucleus	51.86	51.67
KRH20324	Soybean	mitochondrion	50.56	50.37
KRG93347	Soybean	peroxisome	47.77	48.67
KRH63505	Soybean	mitochondrion	40.15	48.65
GSMUA_Achr3P26460_001	Banana	cytosol	63.57	43.68
KRH54453	Soybean	endoplasmic reticulum	39.78	42.54
KRH57015	Soybean	endoplasmic reticulum	36.99	40.78
KRH13776	Soybean	mitochondrion	32.71	32.77
KRH43670	Soybean	mitochondrion	32.34	32.4
KRH21731	Soybean	cytosol	17.29	29.81
KRH10621	Soybean	cytosol	28.44	29.59
KRH49851	Soybean	mitochondrion	28.62	28.68
KRH42067	Soybean	mitochondrion	28.62	28.47
KRH72280	Soybean	cytosol, nucleus	25.84	27.97
KRH03077	Soybean	cytosol, nucleus	25.84	27.97
KRH05288	Soybean	cytosol	25.09	27.22
KRH37502	Soybean	endoplasmic reticulum	25.09	26.52
KRH12550	Soybean	mitochondrion	24.54	25.98
KRH50740	Soybean	endoplasmic reticulum	24.35	21.94
KRH02344	Soybean	endoplasmic reticulum	23.98	21.64
KRH11951	Soybean	endoplasmic reticulum	23.98	21.61
KRH36977	Soybean	endoplasmic reticulum, extracellular, vacuole	23.05	21.23
KRH45519	Soybean	nucleus	28.25	15.15

Protein Annotations

EntrezGene:100527654	MapMan:21.5.1	Gene3D:3.40.309.10	Gene3D:3.40.605.10	EMBL:ACUP02003357	EMBL:ACUP02003358
InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	EnsemblPlantsGene:GLYMA_05G231900
GO:GO:0003674	GO:GO:0003824	GO:GO:0004029	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016620	GO:GO:0055114	UniProt:I1K5U0	InterPro:IPR016162	InterPro:IPR016163	EnsemblPlants:KRH60295
ProteinID:KRH60295	ProteinID:KRH60295.1	PFAM:PF00171	ScanProsite:PS00687	PANTHER:PTHR11699	PANTHER:PTHR11699:SF182
SUPFAM:SSF53720	SignalP:SignalP-noTM	UniParc:UPI00023C3FDB	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:+:40934314..40940453

Molecular Weight (calculated)

58543.6 Da

IEP (calculated)

6.520

GRAVY (calculated)

0.020

Length

538 amino acids

Sequence
(BLAST)

001: MFLSLHIVLI NHIATFHLPT PSLRQPPFSL SLARMSALSN SSSSHGNSFL KMPAIKFTKL FINGDFVDSI SGRTFETIDP RKEEVIARVS EGDKEDIDIA
101: VKAARQAFDS GPWPRLPGSE RAKIMMKWAD LVDENIEELA ALDTIDAGKL YYINKVAEIP SATNALRYYA GAADKIHGDV LKMNGDFHAY TLLEPIGVVG
201: HIIPWNAPSL SFFIKVSPSL AAGCTMVLKP AEQTPLSALF YAHLAKLAGI PDGVLNIVPG FGPTAGAAIS SHMDIDAVSF TGSIEVGREV LQAAAWSNLK
301: PVSLELGGKS PLIIFNDADI DKASELALFG IMSNKGEICV AGSRVFVQEE IYDEFEKKLV EKAKSWVVGD PFDPKSLQGP QADRNQLEKI LSYIEHGKRE
401: GATLLTGGNT VGNKGYYIEP TIFSNVKEDM LIARDEIFGP VLALMKFKTM EEAIKSANNT KYGLAAGIVT KNLDTANTMS RSIRAGIVWI NCYFTVGSDV
501: PFGGYKMSGF GRDLGLQALH KYLQVKSVVT PIHNSPWL

Best Arabidopsis Sequence Match ( AT3G24503.1 )
(BLAST)

001: MENGKCNGAT TVKLPEIKFT KLFINGQFID AASGKTFETI DPRNGEVIAT IAEGDKEDVD LAVNAARYAF DHGPWPRMTG FERAKLINKF ADLIEENIEE
101: LAKLDAVDGG KLFQLGKYAD IPATAGHFRY NAGAADKIHG ETLKMTRQSL FGYTLKEPIG VVGNIIPWNF PSIMFATKVA PAMAAGCTMV VKPAEQTSLS
201: ALFYAHLSKE AGIPDGVLNI VTGFGSTAGA AIASHMDVDK VSFTGSTDVG RKIMQAAAAS NLKKVSLELG GKSPLLIFND ADIDKAADLA LLGCFYNKGE
301: ICVASSRVFV QEGIYDKVVE KLVEKAKDWT VGDPFDSTAR QGPQVDKRQF EKILSYIEHG KNEGATLLTG GKAIGDKGYF IQPTIFADVT EDMKIYQDEI
401: FGPVMSLMKF KTVEEGIKCA NNTKYGLAAG ILSQDIDLIN TVSRSIKAGI IWVNCYFGFD LDCPYGGYKM SGNCRESGMD ALDNYLQTKS VVMPLHNSPW
501: M

Arabidopsis Description

ALDH2C4Aldehyde dehydrogenase family 2 member C4 [Source:UniProtKB/Swiss-Prot;Acc:Q56YU0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.