CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99327	Soybean	mitochondrion	96.83	96.83
KRH74615	Soybean	mitochondrion	88.43	88.1
KRH69545	Soybean	mitochondrion	87.69	87.2
KRH03318	Soybean	mitochondrion	71.64	85.14
VIT_01s0137g00080.t01	Wine grape	cytosol	59.51	80.56
Solyc05g005700.2.1	Tomato	mitochondrion, unclear	79.48	80.53
PGSC0003DMT400010555	Potato	mitochondrion	79.1	80.15
VIT_01s0026g00220.t01	Wine grape	mitochondrion	80.6	79.27
Solyc08g068190.2.1	Tomato	nucleus, unclear	77.99	78.28
AT1G23800.1	Thale cress	mitochondrion	77.8	78.09
GSMUA_Achr3P06170_001	Banana	mitochondrion	77.43	78.01
CDY57318	Canola	mitochondrion	77.99	77.84
TraesCS7A01G210100.1	Wheat	mitochondrion	79.66	77.78
TraesCS7D01G211900.1	Wheat	mitochondrion	79.48	77.6
KRH54419	Soybean	nucleus	78.17	77.59
TraesCS7B01G116800.1	Wheat	mitochondrion	79.85	77.54
KXG19772	Sorghum	mitochondrion	80.41	77.52
GSMUA_Achr5P05290_001	Banana	mitochondrion	78.36	77.49
Bra016330.1-P	Field mustard	mitochondrion	77.61	77.47
CDX91724	Canola	mitochondrion	77.43	77.28
HORVU6Hr1G072830.2	Barley	peroxisome	73.88	77.19
HORVU7Hr1G042880.1	Barley	mitochondrion	78.92	77.05
Os06t0270900-01	Rice	mitochondrion	78.92	77.05
Bra024619.1-P	Field mustard	mitochondrion	76.87	76.87
KRH20324	Soybean	mitochondrion	77.05	76.48
CDY47634	Canola	mitochondrion	77.05	75.92
PGSC0003DMT400010556	Potato	plastid	33.96	75.83
KRG93347	Soybean	peroxisome	73.69	74.81
TraesCS6D01G272400.1	Wheat	mitochondrion	74.25	73.03
CDY61548	Canola	cytosol, peroxisome	75.37	72.79
KXG30827	Sorghum	mitochondrion, plastid	74.63	72.6
Os02t0730000-02	Rice	mitochondrion	74.63	72.33
TraesCS6B01G321400.1	Wheat	mitochondrion	57.46	71.79
KRH63505	Soybean	mitochondrion	59.14	71.4
Zm00001d045706_P001	Maize	mitochondrion	77.61	70.99
PGSC0003DMT400037582	Potato	mitochondrion	76.68	69.19
Zm00001d051754_P003	Maize	cytosol	74.25	68.74
VIT_01s0026g00210.t01	Wine grape	cytosol	65.86	60.14
KRH48414	Soybean	peroxisome	21.83	59.09
KRH48412	Soybean	nucleus	53.73	57.48
KRH41586	Soybean	nucleus	53.36	57.09
KRH39268	Soybean	nucleus	53.17	56.89
KRH60293	Soybean	nucleus	52.99	56.57
KRH41589	Soybean	nucleus	52.8	56.04
KRH39267	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	53.92	55.9
KRH48410	Soybean	cytosol	50.19	53.69
KRH39270	Soybean	cytosol	50.0	53.49
KRH60295	Soybean	mitochondrion, plastid	52.99	52.79
KRH54453	Soybean	endoplasmic reticulum	37.13	39.56
KRH57015	Soybean	endoplasmic reticulum	35.63	39.14
KRH43670	Soybean	mitochondrion	37.13	37.06
KRH13776	Soybean	mitochondrion	36.75	36.69
KRH72280	Soybean	cytosol, nucleus	28.17	30.38
KRH03077	Soybean	cytosol, nucleus	27.99	30.18
KRH10621	Soybean	cytosol	28.92	29.98
KRH05288	Soybean	cytosol	27.05	29.23
KRH49851	Soybean	mitochondrion	28.73	28.68
KRH42067	Soybean	mitochondrion	28.92	28.65
KRH21731	Soybean	cytosol	16.6	28.53
KRH12550	Soybean	mitochondrion	24.81	26.18
KRH37502	Soybean	endoplasmic reticulum	24.81	26.13
KRH11951	Soybean	endoplasmic reticulum	27.8	24.96
KRH50740	Soybean	endoplasmic reticulum	27.8	24.96
KRH02344	Soybean	endoplasmic reticulum	27.43	24.66
KRH36977	Soybean	endoplasmic reticulum, extracellular, vacuole	26.49	24.32
KRH45519	Soybean	nucleus	28.36	15.15

Protein Annotations

EntrezGene:100811891	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:50.1.2	EMBL:ACUP02005275	InterPro:Ald_DH/histidinol_DH
InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	EnsemblPlantsGene:GLYMA_08G288000
GO:GO:0003674	GO:GO:0003824	GO:GO:0004029	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016620	GO:GO:0055114	UniProt:I1KXG9	InterPro:IPR016162	InterPro:IPR016163	EnsemblPlants:KRH45689
ProteinID:KRH45689	ProteinID:KRH45689.1	PFAM:PF00171	ScanProsite:PS00070	ScanProsite:PS00687	PANTHER:PTHR11699
PANTHER:PTHR11699:SF225	SUPFAM:SSF53720	UniParc:UPI00023386F7	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:39916440..39920627

Molecular Weight (calculated)

58390.9 Da

IEP (calculated)

7.620

GRAVY (calculated)

-0.122

Length

536 amino acids

Sequence
(BLAST)

001: MASSLRISRL ISRSFSSTSF FSRGGNGFLG SRQSKFSTSA AIEEEPIKPS IQVEHTQLLI DGKFVDAASG KTFQTLDPRT GEVIAHVAEG HSEDVDRAVS
101: AARKAFDHGP WPKMTAYERQ RILLRVADLI EKHNDELAAL ETWDNGKPYE QAAKIEVPML VRLIRYYAGW ADKIHGLTVP ADGPYHVQTL HEPIGVAGQI
201: IPWNFPLLMF AWKVGPALAC GNTIVLKTAE QTPLSALYAA KLFHEAGLPA GVLNVVSGFG PTAGAALASH MEVDKLAFTG STDTGKVVLE LAAKSNLKPV
301: TLELGGKSPF IVCEDADVDQ AVELAHFALF FNQGQCCCAG SRTFVHENVY EEFVQKAKAR ALRRVVGDPF KGGIEQGPQI DSDQFEKILR YIRSGVESGA
401: TLETGGDKLG NKGFYIQPTV FSNVKDGMLI AKDEIFGPVQ SILKFKDLGE VVQRANNTRY GLAAGVFTKN MDTANTLTRA LRVGTVWINC FDTFDAAIPF
501: GGYKMSGQGR EKGEYSLKNY LQVKAVVNPL KNPAWL

Best Arabidopsis Sequence Match ( AT3G48000.1 )
(BLAST)

001: MAARRVSSLL SRSFSASSPL LFRSQGRNCY NGGILRRFGT SSAAAEEIIN PSVQVSHTQL LINGNFVDSA SGKTFPTLDP RTGEVIAHVA EGDAEDINRA
101: VKAARTAFDE GPWPKMSAYE RSRVLLRFAD LVEKHSEELA SLETWDNGKP YQQSLTAEIP MFARLFRYYA GWADKIHGLT IPADGNYQVH TLHEPIGVAG
201: QIIPWNFPLL MFAWKVGPAL ACGNTIVLKT AEQTPLTAFY AGKLFLEAGL PPGVLNIVSG FGATAGAALA SHMDVDKLAF TGSTDTGKVI LGLAANSNLK
301: PVTLELGGKS PFIVFEDADI DKAVELAHFA LFFNQGQCCC AGSRTFVHEK VYDEFVEKSK ARALKRVVGD PFRKGIEQGP QIDLKQFEKV MKYIKSGIES
401: NATLECGGDQ IGDKGYFIQP TVFSNVKDDM LIAQDEIFGP VQSILKFSDV DEVIKRANET KYGLAAGVFT KNLDTANRVS RALKAGTVWV NCFDVFDAAI
501: PFGGYKMSGN GREKGIYSLN NYLQIKAVVT ALNKPAWI

Arabidopsis Description

ALDH2B4Aldehyde dehydrogenase family 2 member B4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SU63]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.