CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 24385303

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60293	Soybean	nucleus	95.81	95.62
KRH48412	Soybean	nucleus	82.44	82.44
KRH39268	Soybean	nucleus	81.24	81.24
KRH41589	Soybean	nucleus	79.84	79.21
KRH39267	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	79.84	77.37
KRH48410	Soybean	cytosol	76.85	76.85
KRH48414	Soybean	peroxisome	30.14	76.26
KRH39270	Soybean	cytosol	75.45	75.45
KRH60295	Soybean	mitochondrion, plastid	79.64	74.16
Solyc12g007030.1.1	Tomato	cytosol	71.86	72.0
PGSC0003DMT400000852	Potato	cytosol	71.86	72.0
GSMUA_Achr6P04810_001	Banana	cytosol	61.48	71.63
Os01t0591000-01	Rice	cytosol	71.26	71.12
TraesCS3D01G412700.2	Wheat	golgi	70.86	71.0
CDX94807	Canola	cytoskeleton, cytosol, peroxisome	70.86	70.86
TraesCS3A01G417200.1	Wheat	cytosol	70.66	70.8
CDX93017	Canola	cytoskeleton, cytosol, peroxisome	70.66	70.66
TraesCS3B01G452100.1	Wheat	golgi	70.46	70.6
KXG32803	Sorghum	cytosol	70.46	70.46
Bra001952.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	70.46	70.46
AT3G24503.1	Thale cress	peroxisome	70.46	70.46
GSMUA_Achr5P24920_001	Banana	cytosol	70.06	69.64
TraesCS1D01G310100.1	Wheat	peroxisome	68.66	69.49
TraesCS1B01G321900.1	Wheat	peroxisome	68.46	69.29
EES00989	Sorghum	cytosol	69.26	68.85
TraesCS1A01G310600.1	Wheat	peroxisome	68.06	68.75
TraesCS3A01G212300.1	Wheat	peroxisome	68.26	67.99
HORVU1Hr1G068020.1	Barley	cytosol	67.66	67.94
HORVU0Hr1G031700.1	Barley	cytosol	67.66	67.94
Os01t0591300-01	Rice	cytosol	68.66	67.85
Zm00001d044340_P001	Maize	cytosol	68.86	67.51
HORVU3Hr1G092680.2	Barley	mitochondrion, peroxisome, plastid	70.66	67.43
HORVU0Hr1G028680.4	Barley	peroxisome	56.49	67.22
TraesCS7B01G259100.1	Wheat	peroxisome	67.86	66.28
Zm00001d011259_P001	Maize	cytosol	67.47	66.02
TraesCS7D01G353900.1	Wheat	peroxisome	67.27	65.44
TraesCS7B01G259200.1	Wheat	peroxisome	66.67	65.11
KXG20268	Sorghum	cytosol	67.47	64.88
TraesCS7D01G354000.1	Wheat	peroxisome	66.27	64.72
TraesCS7A01G369400.1	Wheat	unclear	66.47	64.66
Zm00001d036933_P001	Maize	cytosol	68.26	64.17
TraesCS7A01G369300.1	Wheat	peroxisome	67.86	61.15
HORVU7Hr1G085120.2	Barley	mitochondrion	67.66	60.75
KRH03318	Soybean	mitochondrion	51.3	56.98
Zm00001d044339_P003	Maize	cytosol, peroxisome, plasma membrane	65.47	56.26
KRH45689	Soybean	nucleus	57.09	53.36
KRG99327	Soybean	mitochondrion	56.69	52.99
KRH54419	Soybean	nucleus	55.69	51.67
KRH74615	Soybean	mitochondrion	55.29	51.49
KRH20324	Soybean	mitochondrion	55.29	51.3
KRH69545	Soybean	mitochondrion	54.69	50.83
KRG93347	Soybean	peroxisome	52.1	49.43
KRH63505	Soybean	mitochondrion	43.31	48.87
GSMUA_Achr3P26460_001	Banana	cytosol	70.26	44.96
KRH54453	Soybean	endoplasmic reticulum	43.51	43.34
KRH57015	Soybean	endoplasmic reticulum	40.32	41.39
KRH13776	Soybean	mitochondrion	36.53	34.08
KRH43670	Soybean	mitochondrion	36.13	33.71
KRH72280	Soybean	cytosol, nucleus	29.54	29.78
KRH03077	Soybean	cytosol, nucleus	29.54	29.78
KRH10621	Soybean	cytosol	30.14	29.21
KRH21731	Soybean	cytosol	18.16	29.17
KRH05288	Soybean	cytosol	28.74	29.03
KRH49851	Soybean	mitochondrion	30.34	28.31
KRH42067	Soybean	mitochondrion	30.34	28.1
KRH37502	Soybean	endoplasmic reticulum	26.15	25.74
KRH12550	Soybean	mitochondrion	25.95	25.59
KRH11951	Soybean	endoplasmic reticulum	26.75	22.45
KRH50740	Soybean	endoplasmic reticulum	26.75	22.45
KRH02344	Soybean	endoplasmic reticulum	26.55	22.32
KRH36977	Soybean	endoplasmic reticulum, extracellular, vacuole	25.75	22.09
KRH45519	Soybean	nucleus	29.14	14.56

Protein Annotations

EntrezGene:100811540	MapMan:21.5.1	Gene3D:3.40.309.10	Gene3D:3.40.605.10	EMBL:ACUP02004772	InterPro:Ald_DH/histidinol_DH
InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	EnsemblPlantsGene:GLYMA_08G039200
GO:GO:0003674	GO:GO:0003824	GO:GO:0004029	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016620	GO:GO:0055114	UniProt:I1KQ26	InterPro:IPR016162	InterPro:IPR016163	EnsemblPlants:KRH41586
ProteinID:KRH41586	ProteinID:KRH41586.1	PFAM:PF00171	ScanProsite:PS00070	ScanProsite:PS00687	PANTHER:PTHR11699
PANTHER:PTHR11699:SF182	SUPFAM:SSF53720	UniParc:UPI0001BA910D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:3066599..3071554

Molecular Weight (calculated)

54415.4 Da

IEP (calculated)

6.365

GRAVY (calculated)

-0.081

Length

501 amino acids

Sequence
(BLAST)

001: MTSLTNGDAG SLNKVPTIKF TKLFINGDFV DSLSGKTFET IDPRTGDVIA RISEGDKEDI DIAVKAARHA FDNGPWPRLP GSERARILLK WAEIIEENAE
101: ELAALDAIDA GKLYHMCRNV EVPAAANTLR YYAGAADKIH GEVLKMSREF HAYTLLEPLG VVGHITPWNF PNTMFYIKVA PSLAAGCTMV LKPAEQTPLS
201: ALFSAHLAKL AGIPDGVINV VPGFGPTAGA ALSSHMDVDK VSFTGSTQTG RVIMQAAAKS NLKQVSLELG GKSPLIIFDD ADIDKATELA LLGILYNKGE
301: VCVASSRVFV QEGIYDEFEK KLVEKAKAWV VGDPFDPKVQ QGPQVDKEQF EKVLSYIEHG KKEGATLLTG GKTVGNKGYF IEPTIFSNIR EDMLIAQDEI
401: FGPVMALKKF KTTEEAIKSA NNTKYGLAAG IVTKNLDTAN TVSRSIRAGT IWINCYFAFG DDVPFGGYKM SGFGKDHGLE ALHKYLQVKS VVTPLYNSPW
501: L

Best Arabidopsis Sequence Match ( AT3G24503.1 )
(BLAST)

001: MENGKCNGAT TVKLPEIKFT KLFINGQFID AASGKTFETI DPRNGEVIAT IAEGDKEDVD LAVNAARYAF DHGPWPRMTG FERAKLINKF ADLIEENIEE
101: LAKLDAVDGG KLFQLGKYAD IPATAGHFRY NAGAADKIHG ETLKMTRQSL FGYTLKEPIG VVGNIIPWNF PSIMFATKVA PAMAAGCTMV VKPAEQTSLS
201: ALFYAHLSKE AGIPDGVLNI VTGFGSTAGA AIASHMDVDK VSFTGSTDVG RKIMQAAAAS NLKKVSLELG GKSPLLIFND ADIDKAADLA LLGCFYNKGE
301: ICVASSRVFV QEGIYDKVVE KLVEKAKDWT VGDPFDSTAR QGPQVDKRQF EKILSYIEHG KNEGATLLTG GKAIGDKGYF IQPTIFADVT EDMKIYQDEI
401: FGPVMSLMKF KTVEEGIKCA NNTKYGLAAG ILSQDIDLIN TVSRSIKAGI IWVNCYFGFD LDCPYGGYKM SGNCRESGMD ALDNYLQTKS VVMPLHNSPW
501: M

Arabidopsis Description

ALDH2C4Aldehyde dehydrogenase family 2 member C4 [Source:UniProtKB/Swiss-Prot;Acc:Q56YU0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.