CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
mitochondrion 2
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 25806999
endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12550	Soybean	mitochondrion	97.84	98.03
VIT_11s0016g00900.t01	Wine grape	cytosol	83.1	83.27
GSMUA_Achr8P23610_001	Banana	cytosol, peroxisome, plastid	82.71	81.75
Os09t0440300-01	Rice	cytosol, mitochondrion, peroxisome, plastid	81.14	81.14
EER98972	Sorghum	cytosol, peroxisome, plasma membrane	81.14	81.14
Zm00001d005818_P001	Maize	cytosol	80.94	80.63
TraesCS5A01G213600.1	Wheat	golgi, unclear	80.55	80.55
PGSC0003DMT400058895	Potato	cytosol	80.55	80.55
TraesCS5D01G218400.1	Wheat	peroxisome	80.35	80.35
TraesCS5B01G210100.1	Wheat	peroxisome	80.35	80.35
AT1G54100.2	Thale cress	peroxisome	79.96	80.12
CDY61473	Canola	cytosol, peroxisome, plastid	78.98	79.76
Bra030906.1-P	Field mustard	cytosol, peroxisome, plastid	78.78	79.56
CDY02483	Canola	cytosol, peroxisome, plastid	79.76	78.99
Zm00001d003983_P002	Maize	cytosol	33.2	78.6
Solyc03g122310.2.1	Tomato	nucleus	77.8	74.58
HORVU5Hr1G062090.1	Barley	plastid	79.57	70.8
CDY51401	Canola	cytosol	30.45	70.45
Bra037964.1-P	Field mustard	cytosol	30.26	66.96
Zm00001d050495_P001	Maize	plastid	28.68	48.67
Zm00001d008814_P001	Maize	cytosol	15.13	34.68
KRH57015	Soybean	endoplasmic reticulum	26.72	27.87
KRH54453	Soybean	endoplasmic reticulum	27.11	27.44
KRH41589	Soybean	nucleus	26.72	26.93
KRH03318	Soybean	mitochondrion	23.77	26.83
KRH39268	Soybean	nucleus	25.93	26.35
KRH48412	Soybean	nucleus	25.93	26.35
KRH41586	Soybean	nucleus	25.74	26.15
KRH48410	Soybean	cytosol	25.74	26.15
KRH39270	Soybean	cytosol	25.34	25.75
KRH54419	Soybean	nucleus	27.31	25.74
KRH39267	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	26.13	25.73
KRG93347	Soybean	peroxisome	26.52	25.57
KRH60293	Soybean	nucleus	25.15	25.5
KRH13776	Soybean	mitochondrion	26.72	25.33
KRH74615	Soybean	mitochondrion	26.72	25.28
KRH69545	Soybean	mitochondrion	26.72	25.23
KRH60295	Soybean	mitochondrion, plastid	26.52	25.09
KRG99327	Soybean	mitochondrion	26.33	25.0
KRH43670	Soybean	mitochondrion	26.33	24.95
KRH20324	Soybean	mitochondrion	26.33	24.81
KRH45689	Soybean	nucleus	26.13	24.81
KRH63505	Soybean	mitochondrion	20.63	23.65
KRH42067	Soybean	mitochondrion	24.95	23.48
KRH49851	Soybean	mitochondrion	24.75	23.46
KRH21731	Soybean	cytosol	14.34	23.4
KRH48414	Soybean	peroxisome	9.04	23.23
KRH10621	Soybean	cytosol	23.58	23.21
KRH05288	Soybean	cytosol	22.2	22.78
KRH72280	Soybean	cytosol, nucleus	21.61	22.13
KRH03077	Soybean	cytosol, nucleus	21.61	22.13
KRH36977	Soybean	endoplasmic reticulum, extracellular, vacuole	21.81	19.01
KRH11951	Soybean	endoplasmic reticulum	21.61	18.43
KRH02344	Soybean	endoplasmic reticulum	20.24	17.28
KRH50740	Soybean	endoplasmic reticulum	20.24	17.25
KRH45519	Soybean	nucleus	23.38	11.86

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:50.1.2	EMBL:ACUP02005457	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C
InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	EnsemblPlantsGene:GLYMA_09G070300	GO:GO:0003674	GO:GO:0003824
GO:GO:0004029	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114
UniProt:I1L1Q8	InterPro:IPR016162	InterPro:IPR016163	EnsemblPlants:KRH37502	ProteinID:KRH37502	ProteinID:KRH37502.1
PFAM:PF00171	ScanProsite:PS00687	PANTHER:PTHR43521	PANTHER:PTHR43521:SF1	SUPFAM:SSF53720	UniParc:UPI00023CB4D6
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:7178503..7184727

Molecular Weight (calculated)

54419.7 Da

IEP (calculated)

5.843

GRAVY (calculated)

0.050

Length

509 amino acids

Sequence
(BLAST)

001: MGSDNHQNLE FLKEIGLGSS NIGSYINGQW KATGSSVTSV NPSNNQSIAQ VTEATLQDFE EGLRACSEAA KTWMTIPAPK RGEIVRQIGE ALRAKLDPLG
101: RLVSLEMGKI LPEGIGEVQE IIDMCDYCVG LSRQLNGSII PSERPDHMMF EVWNPLGIVG VISAFNFPCA VLGWNACIAL VCGNCVVWKG APTTPLITIA
201: VTKLVAEVLE RNKLPGAIFT SFCGGADIGQ AIAKDTRIPL VSFTGSSKVG LMVQQTVNER FGKCLLELSG NNAIIVMDDA DIKLAVRSIL FAAVGTTGQR
301: CTTCRRLFLH ESIYTDVLDQ LVEVYKQVKI GNPLEKGTLV GPLHTRTSVE NFQKGISVIK SQGGKILTGG SVLESGGNFV QPTIVEISPD APVVKEELFG
401: PVLYVMKFQT LEEAIALNNS VPQGLSSSIF TQRPGTIFKW IGPRGSDCGI VNANIPTNGA EIGGAFGGEK ATGGGREAGS DSWKQYMRRS TCTINYGSEL
501: PLAQGINFG

Best Arabidopsis Sequence Match ( AT1G54100.1 )
(BLAST)

001: MGSANNEYEF LSEIGLTSHN LGSYVAGKWQ ANGPLVSTLN PANNQPIAQV VEASLEDYEQ GLKACEEAAK IWMQVTAPKR GDIVRQIGDA LRSKLDYLGR
101: LLSLEMGKIL AEGIGEVQEV IDMCDFAVGL SRQLNGSVIP SERPNHMMLE MWNPLGIVGV ITAFNFPCAV LGWNACIALV CGNCVVWKGA PTTPLITIAM
201: TKLVAEVLEK NNLPGAIFTA MCGGAEIGEA IAKDTRIPLV SFTGSSRVGS MVQQTVNARS GKTLLELSGN NAIIVMDDAD IQLAARSVLF AAVGTAGQRC
301: TTCRRLLLHE SVYDKVLEQL LTSYKQVKIG NPLEKGTLLG PLHTPESKKN FEKGIEVIKS QGGKILTGGK AVEGEGNFVE PTIIEISADA AVVKEELFAP
401: VLYVLKFKSF GEAVAINNSV PQGLSSSIFT RNPENIFRWI GPLGSDCGIV NVNIPTNGAE IGGAFGGEKA TGGGREAGSD SWKQYMRRST CTINYGNELP
501: LAQGINFG

Arabidopsis Description

ALDH7B4ALDH7B4 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F2]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.