Factsheet for Solyc03g122310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058895	Potato	cytosol	90.58	94.5
GSMUA_Achr8P23610_001	Banana	cytosol, peroxisome, plastid	78.72	81.17
Bra030906.1-P	Field mustard	cytosol, peroxisome, plastid	76.08	80.16
CDY61473	Canola	cytosol, peroxisome, plastid	75.71	79.76
VIT_11s0016g00900.t01	Wine grape	cytosol	76.27	79.72
AT1G54100.2	Thale cress	peroxisome	76.27	79.72
CDY02483	Canola	cytosol, peroxisome, plastid	76.65	79.18
TraesCS5A01G213600.1	Wheat	golgi, unclear	75.33	78.59
Os09t0440300-01	Rice	cytosol, mitochondrion, peroxisome, plastid	75.14	78.39
TraesCS5D01G218400.1	Wheat	peroxisome	74.95	78.19
TraesCS5B01G210100.1	Wheat	peroxisome	74.95	78.19
KRH12550	Soybean	mitochondrion	74.76	78.15
KRH37502	Soybean	endoplasmic reticulum	74.58	77.8
EER98972	Sorghum	cytosol, peroxisome, plasma membrane	74.39	77.6
Zm00001d005818_P001	Maize	cytosol	74.01	76.91
CDY51401	Canola	cytosol	30.7	74.09
Zm00001d003983_P002	Maize	cytosol	29.94	73.95
Bra037964.1-P	Field mustard	cytosol	30.32	70.0
HORVU5Hr1G062090.1	Barley	plastid	74.95	69.58
Zm00001d050495_P001	Maize	plastid	26.93	47.67
Zm00001d008814_P001	Maize	cytosol	14.31	34.23
Solyc09g090700.1.1	Tomato	plastid	27.87	28.35
Solyc02g086970.2.1	Tomato	cytosol	25.05	28.12
Solyc06g071290.2.1	Tomato	plastid	25.05	26.39
Solyc05g005700.2.1	Tomato	mitochondrion, unclear	25.8	25.9
Solyc03g114150.2.1	Tomato	plastid	25.61	25.42
Solyc12g007030.1.1	Tomato	cytosol	23.92	25.4
Solyc03g113800.2.1	Tomato	plastid	24.11	25.35
Solyc08g068190.2.1	Tomato	nucleus, unclear	25.05	24.91
Solyc07g005390.2.1	Tomato	cytosol, extracellular, nucleus, plastid	20.72	22.18
Solyc12g099290.1.1	Tomato	plastid	19.59	17.54

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:50.1.2	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_GLU
InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163	UniProt:K4BN29
PFAM:PF00171	ScanProsite:PS00687	PANTHER:PTHR43521	PANTHER:PTHR43521:SF1	SUPFAM:SSF53720	EnsemblPlantsGene:Solyc03g122310.2
EnsemblPlants:Solyc03g122310.2.1	UniParc:UPI00027659E9	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:70174077..70179771

Molecular Weight (calculated)

57198.3 Da

IEP (calculated)

5.579

GRAVY (calculated)

0.082

Length

531 amino acids

Sequence
(BLAST)

001: MTNFTMEEYE FLKELGIGPQ NLGCYVNGTW KATGPVISTV NPASNQIIAE VYEASARDYE EGMSACAEAA KIWVQVPAPK RGEIVRQIGD ALRANLQQFG
101: RLVSLEMGKI LPEGIGEVQE VIDMCDFAVG LSRQLNGSII PSERPNHMML ETWNPLGIVG VITAFNFPCA VLGWNACIAL VCGNCVVWKG APTTPLVTIA
201: MTKIVASVLE KNNLPGSIFT AFCGGAAVGQ AIAMDTRIPL VSFTGSSKVG LAVQQTVSQR FGKCLLELSG NNAIIIMDDA DIKLAVRSVL FAAVGTAGQR
301: CTTCRRLLVH ESIYDKVLEP LVDVYKQVKI GDPLEKGTLL GPLHTRTSRE NFEKGIHNIK SQGGKILTGG SVVESEGNFV RPTIVEISSK AEIVKEELFA
401: PVLYVMKFKT FEEAVEINNS VPQGLSSSIF TRNPENIFKW IGPQGSDCGI VNVNIPTNGA EIGGAFGGEK GTGGGREAGS DSWKQYMRLQ STMGVNYHWL
501: KESILASEID TPVSLLNSSC KVLMIAPESL K

Best Arabidopsis Sequence Match ( AT1G54100.1 )
(BLAST)

001: MGSANNEYEF LSEIGLTSHN LGSYVAGKWQ ANGPLVSTLN PANNQPIAQV VEASLEDYEQ GLKACEEAAK IWMQVTAPKR GDIVRQIGDA LRSKLDYLGR
101: LLSLEMGKIL AEGIGEVQEV IDMCDFAVGL SRQLNGSVIP SERPNHMMLE MWNPLGIVGV ITAFNFPCAV LGWNACIALV CGNCVVWKGA PTTPLITIAM
201: TKLVAEVLEK NNLPGAIFTA MCGGAEIGEA IAKDTRIPLV SFTGSSRVGS MVQQTVNARS GKTLLELSGN NAIIVMDDAD IQLAARSVLF AAVGTAGQRC
301: TTCRRLLLHE SVYDKVLEQL LTSYKQVKIG NPLEKGTLLG PLHTPESKKN FEKGIEVIKS QGGKILTGGK AVEGEGNFVE PTIIEISADA AVVKEELFAP
401: VLYVLKFKSF GEAVAINNSV PQGLSSSIFT RNPENIFRWI GPLGSDCGIV NVNIPTNGAE IGGAFGGEKA TGGGREAGSD SWKQYMRRST CTINYGNELP
501: LAQGINFG

Arabidopsis Description

ALDH7B4ALDH7B4 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F2]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.