Factsheet for Solyc07g005390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus, cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028915	Potato	cytosol	99.6	99.6
KRH03077	Soybean	cytosol, nucleus	93.95	93.76
VIT_11s0037g00070.t01	Wine grape	cytosol	93.55	93.55
KRH72280	Soybean	cytosol, nucleus	93.15	92.96
EES13911	Sorghum	cytosol	91.33	90.96
GSMUA_Achr7P19330_001	Banana	cytosol	91.13	90.95
TraesCS2A01G190700.1	Wheat	cytosol	90.93	90.93
Bra032110.1-P	Field mustard	cytosol	90.93	90.93
TraesCS2B01G216400.1	Wheat	cytosol	90.93	90.93
HORVU2Hr1G036110.7	Barley	cytosol	90.93	90.93
Bra007862.1-P	Field mustard	cytosol	90.52	90.52
TraesCS2D01G197300.1	Wheat	golgi	90.52	90.52
GSMUA_Achr6P01980_001	Banana	cytosol	90.32	90.32
Os08t0440800-01	Rice	extracellular, plasma membrane	90.52	89.98
CDY34779	Canola	peroxisome	90.73	89.46
CDY20292	Canola	cytosol	90.73	89.46
Zm00001d050428_P003	Maize	cytosol	90.52	88.74
CDY46134	Canola	peroxisome	56.25	87.19
CDY55249	Canola	cytosol	76.61	86.56
AT2G24270.2	Thale cress	cytosol	90.52	83.77
Solyc02g086970.2.1	Tomato	cytosol	28.83	30.23
Solyc08g068190.2.1	Tomato	nucleus, unclear	30.65	28.46
Solyc06g071290.2.1	Tomato	plastid	28.83	28.37
Solyc12g007030.1.1	Tomato	cytosol	28.43	28.2
Solyc03g114150.2.1	Tomato	plastid	30.24	28.04
Solyc03g113800.2.1	Tomato	plastid	28.43	27.92
Solyc05g005700.2.1	Tomato	mitochondrion, unclear	29.23	27.41
Solyc09g090700.1.1	Tomato	plastid	27.42	26.05
Solyc12g099290.1.1	Tomato	plastid	26.41	22.09
Solyc03g122310.2.1	Tomato	nucleus	22.18	20.72

Protein Annotations

MapMan:2.1.1.4.2	Gene3D:3.40.309.10	Gene3D:3.40.605.10	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS
InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163
UniProt:K4CB11	PFAM:PF00171	ScanProsite:PS00070	ScanProsite:PS00687	PANTHER:PTHR42991	PANTHER:PTHR42991:SF3
SUPFAM:SSF53720	EnsemblPlantsGene:Solyc07g005390.2	EnsemblPlants:Solyc07g005390.2.1	UniParc:UPI000276BDCB	:	:

Description

No Description!

Coordinates

chr7:+:296474..302315

Molecular Weight (calculated)

53118.6 Da

IEP (calculated)

7.167

GRAVY (calculated)

0.041

Length

496 amino acids

Sequence
(BLAST)

001: MAGNGVFAEI IDGEVYKYYC EGEWKKSASG KSVAIINPTT RKTQYKVQAC TQEEVNKVME IAKAAQKSWA KTPLWKRAEL LHKAAAILKE HKAPIAECLV
101: KEIAKPAKDA VTEVVRSGDL VSYTAEEGVR ILGEGKFLVS DSFPGNERTK YCLTSKIPLG VILAIPPFNY PVNLAVSKIA PALIAGNSLV LKPPTQGAVA
201: ALHMVHCFHL AGFPKGLISC VTGKGSEIGD FLTMHPGVNC ISFTGGDTGV AISKKAGMVP LQMELGGKDA CIVLEDADLD LAAGNIVKGG FSYSGQRCTA
301: VKVVLVMESV ADILVEKVNA KVAKLTVGPP EDNCDITPVV SESSANFIEG LVMDAKEKDA TFCQPYKREG NLIWPLLLDN VRPDMRIAWE EPFGPVLPVI
401: RINSVEEGIH HCNASNFGLQ GCVFTKDINK AILISDAMET GTVQINSAPA RGPDHFPFQG IKDSGIGSQG ITNSINMMTK VKTTVINLPT PSYTMG

Best Arabidopsis Sequence Match ( AT2G24270.2 )
(BLAST)

001: MLFHHSFHKN LSIITSSLSL SLLYNTQEAR HRGEILFQRS MAGTGLFAEI LDGEVYKYYA DGEWKTSSSG KSVAIMNPAT RKTQYKVQAC TQEEVNAVME
101: LAKSAQKSWA KTPLWKRAEL LHKAAAILKD NKAPMAESLV KEIAKPAKDS VTEVVRSGDL ISYCAEEGVR ILGEGKFLLS DSFPGNDRTK YCLTSKIPLG
201: VVLAIPPFNY PVNLAVSKIA PALIAGNSLV LKPPTQGAVS CLHMVHCFHL AGFPKGLISC ITGKGSEIGD FLTMHPAVNC ISFTGGDTGI SISKKAGMIP
301: LQMELGGKDA CIVLDDADLD LVASNIIKGG FSYSGQRCTA VKVVLVMESV ADELVEKVKA KVAKLTVGPP EENSDITAVV SESSANFIEG LVMDAKEKGA
401: TFCQEYKREG NLIWPLLLDN VRPDMRIAWE EPFGPVVPVL RINSVEEGIN HCNASNFGLQ GCVFTKDINK AILISDAMET GTVQINSAPA RGPDHFPFQG
501: LKDSGIGSQG VTNSINLMTK VKTTVINLPT PSYSMG

Arabidopsis Description

ALDH11A3aldehyde dehydrogenase 11A3 [Source:TAIR;Acc:AT2G24270]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.