Factsheet for Solyc06g071290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
peroxisome 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
unclear: 26455813
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083025	Potato	cytosol	96.43	96.43
Solyc03g113800.2.1	Tomato	plastid	79.76	79.6
KRH57015	Soybean	endoplasmic reticulum	69.44	71.72
AT1G74920.1	Thale cress	cytosol, peroxisome, plastid	71.03	71.46
CDX68159	Canola	plastid	70.63	71.06
Bra003781.1-P	Field mustard	plastid	70.44	70.86
KRH54453	Soybean	endoplasmic reticulum	70.44	70.58
CDX85862	Canola	cytosol, peroxisome, plastid	70.04	70.32
TraesCS2B01G346000.1	Wheat	mitochondrion	42.86	69.45
VIT_17s0000g07650.t01	Wine grape	peroxisome	69.25	69.38
GSMUA_Achr9P16120_001	Banana	peroxisome	69.44	69.31
VIT_17s0000g07660.t01	Wine grape	cytosol	34.13	69.08
KXG26485	Sorghum	peroxisome	68.65	68.38
Zm00001d025626_P002	Maize	mitochondrion	68.45	68.18
Os04t0464200-01	Rice	peroxisome	68.25	68.12
HORVU2Hr1G080970.1	Barley	peroxisome	68.06	67.79
TraesCS2D01G326900.1	Wheat	golgi, unclear	68.06	67.79
Os08t0424500-01	Rice	plastid	67.06	67.2
TraesCS6A01G371100.1	Wheat	golgi, nucleus, unclear	66.47	66.73
TraesCS6D01G355000.2	Wheat	golgi	66.47	66.6
TraesCS6B01G408100.1	Wheat	mitochondrion	66.47	66.6
Zm00001d032257_P001	Maize	extracellular	66.27	66.01
EES13852	Sorghum	peroxisome	66.07	65.94
Zm00001d050339_P001	Maize	extracellular	65.67	65.54
HORVU6Hr1G087460.1	Barley	plastid	66.27	63.5
TraesCS2A01G336000.1	Wheat	peroxisome	68.45	63.42
Solyc12g007030.1.1	Tomato	cytosol	40.87	41.2
Solyc02g086970.2.1	Tomato	cytosol	35.91	38.27
Solyc08g068190.2.1	Tomato	nucleus, unclear	38.29	36.14
Solyc09g090700.1.1	Tomato	plastid	36.9	35.63
Solyc05g005700.2.1	Tomato	mitochondrion, unclear	37.1	35.35
Solyc03g114150.2.1	Tomato	plastid	37.1	34.95
Solyc07g005390.2.1	Tomato	cytosol, extracellular, nucleus, plastid	28.37	28.83
Solyc03g122310.2.1	Tomato	nucleus	26.39	25.05
Solyc12g099290.1.1	Tomato	plastid	28.77	24.45

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	PDB:4I8Q	PDB:4I9B	MapMan:9.4.1.2	ProteinID:AAX73303.1
InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163	PFAM:PF00171
ScanProsite:PS00070	ScanProsite:PS00687	PANTHER:PTHR43860	PANTHER:PTHR43860:SF3	UniProt:Q56R04	SUPFAM:SSF53720
EnsemblPlantsGene:Solyc06g071290.2	EnsemblPlants:Solyc06g071290.2.1	UniParc:UPI00004F955E	SEG:seg	:	:

Description

Putative betaine aldehyde dehyrogenase [Source:UniProtKB/TrEMBL;Acc:Q56R04]

Coordinates

chr6:-:43856544..43861668

Molecular Weight (calculated)

54801.0 Da

IEP (calculated)

6.335

GRAVY (calculated)

-0.097

Length

504 amino acids

Sequence
(BLAST)

001: MANRNVPIPR RQLYIGGEWR EPVKKNRIPI INPATEEIIG DIPAATAEDV DIAVEAARKA IARDDWGSTT GAQRAKYLRA IAAKVLEKKS VLATLESLDS
101: GKTLYESAAD MDDVAGCFEY YAGLAEALDS RRMTPVNLNS DSYKSYVLRE PLGVVGLITP WNYPLLMAIW KVAPALAAGC AAILKPSELA SITCLELGEI
201: CREIGLPSGA LNILTGLGPE AGGPLASHPH VDKISFTGSG PTGSKIMTAA AQLVKPVSLE LGGKSPIVVF DDIDNLDIAA EWTLFGIFAN TGQVCSATSR
301: LIVQENIASA FMDRLLKWTK NIKISDPLEE DCKLGPVVSA GQYEKVLKFI SNAKSEGATI LCGGERPQHL KKGYYVQPTI ITDVNTSMEI WKEEVFGPVL
401: CVKTFKTEEQ AIELANDTKY GLGAAVMSKD VKRCERFTKA FQTGIIWINC SQPTFNELPW GGKKRSGFGR DLGKWGLENF LNIKQVTEYT SAEPLAFYKS
501: PSKN

Best Arabidopsis Sequence Match ( AT3G48170.1 )
(BLAST)

001: MAITVPRRQL FIGGQWTEPV LRKTLPVVNP ATEDIIGYIP AATSEDVELA VEAARKAFTR NNGKDWARAT GAVRAKYLRA IAAKVIERKS ELANLEAIDC
101: GKPLDEAAWD MDDVAGCFEY YADLAEGLDA KQKTPLSLPM DTFKGYILKE PIGVVGMITP WNYPLLMAVW KVAPSLAAGC TAILKPSELA SLTCLELADI
201: CREVGLPPGV LNILTGLGTE AGAPLASHPH VDKIVFTGST TTGSSIMTSA AKLVKPVSLE LGGKSPIIVF DDVDIDKAVE WTMFGCFWTN GQICSATSRL
301: LVHERIADEF LDKLVKWTKN IKISDPFEEG CRLGPVVSKG QYERVLKFVS NARNEGATVL CGGVRPEHLK KGYFVEPAIV SNVTTSMEIW REEVFGPALC
401: VKTFSTEDEA IQLANDSQYG LAGAVLSNDL ERCDRVSKAF QAGIVWVNCS QPCFCQAPWG GTKRSGFGRE LGEWGLENYL SVKQVTQYIS DEPWGWYKPP
501: SKL

Arabidopsis Description

ALDH10A9Betaine aldehyde dehydrogenase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9STS1]
SUBAcon: [peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.