Factsheet for TraesCS6A01G371100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, nucleus

Predictor Summary:

plastid 2
peroxisome 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308
nucleus: 28628250

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G355000.2	Wheat	golgi	99.4	99.2
TraesCS6B01G408100.1	Wheat	mitochondrion	99.2	99.01
HORVU6Hr1G087460.1	Barley	plastid	98.8	94.3
EES13852	Sorghum	peroxisome	88.05	87.52
Os08t0424500-01	Rice	plastid	87.65	87.48
Zm00001d050339_P001	Maize	extracellular	87.45	86.93
Zm00001d032257_P001	Maize	extracellular	87.45	86.76
GSMUA_Achr9P16120_001	Banana	peroxisome	77.69	77.23
VIT_17s0000g07650.t01	Wine grape	peroxisome	75.1	74.95
AT1G74920.1	Thale cress	cytosol, peroxisome, plastid	74.5	74.65
Bra003781.1-P	Field mustard	plastid	74.1	74.25
CDX68159	Canola	plastid	73.9	74.05
KRH57015	Soybean	endoplasmic reticulum	71.51	73.57
CDX85862	Canola	cytosol, peroxisome, plastid	73.31	73.31
VIT_17s0000g07660.t01	Wine grape	cytosol	35.46	71.49
KRH54453	Soybean	endoplasmic reticulum	71.51	71.37
VIT_14s0066g02410.t01	Wine grape	cytosol, peroxisome, plastid	69.32	69.88
PGSC0003DMT400083025	Potato	cytosol	67.33	67.06
PGSC0003DMT400063205	Potato	cytosol, peroxisome, plastid	67.33	66.93
Solyc03g113800.2.1	Tomato	plastid	66.93	66.53
Solyc06g071290.2.1	Tomato	plastid	66.73	66.47
TraesCS2A01G336000.1	Wheat	peroxisome	71.51	65.99
TraesCS1A01G310600.1	Wheat	peroxisome	39.44	39.92
TraesCS3A01G212300.1	Wheat	peroxisome	39.84	39.76
TraesCS3A01G417200.1	Wheat	cytosol	39.44	39.6
TraesCS7A01G369400.1	Wheat	unclear	40.44	39.42
TraesCS7A01G210100.1	Wheat	mitochondrion	40.04	36.61
TraesCS7A01G369300.1	Wheat	peroxisome	39.84	35.97
TraesCS6A01G155500.1	Wheat	mitochondrion	37.25	35.55
TraesCS2A01G190700.1	Wheat	cytosol	29.08	29.44
TraesCS5A01G213600.1	Wheat	golgi, unclear	27.49	27.11
TraesCS2A01G096000.1	Wheat	vacuole	30.28	25.59
TraesCS2A01G477900.1	Wheat	mitochondrion	25.9	24.39

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:9.4.1.2	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS
InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008802	GO:GO:0009628	GO:GO:0009987	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114
GO:GO:0071454	InterPro:IPR016162	InterPro:IPR016163	PFAM:PF00171	ScanProsite:PS00070	ScanProsite:PS00687
PANTHER:PTHR43860	PANTHER:PTHR43860:SF3	SUPFAM:SSF53720	EnsemblPlantsGene:TraesCS6A01G371100	EnsemblPlants:TraesCS6A01G371100.1	TIGR:cd07110
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:595608679..595613690

Molecular Weight (calculated)

54292.1 Da

IEP (calculated)

5.293

GRAVY (calculated)

-0.066

Length

502 amino acids

Sequence
(BLAST)

001: MVATAKIPQR QLFIDGDWRA PALGRRLPVI NPTTEASIGE IPAGTSEDVD AAVAAARAAL KRNRGRDWSR APGAVRAKYL RAIAAKMIER KSDLARLEAL
101: DCGKPLDEAA WDMDDVAGCF EFFAGHAEAL DKRQNAAVAL PENFKCHLKK EPIGVVALIT PWNYPLLMAV WKVAPALAAG CTAVLKPSEL ASVTCLELGD
201: VCKEIGLPSG VLNIVTGLGN EAGAPLSSHP DVDKVAFTGS YATGQKIMVA AAPTVKPVTL ELGGKSPIVV FDDVDIDKAV EWTLFGCFWT NGQICSATSR
301: LLIHKNIAKE FVDRMVAWSK NIKVSDPLEE GCRLGPVVSE GQYEKIKKFV ANAKSEGATI LTGGVRPKHL EKGFFIEPTI ITDINTSMEI WREEVFGPVL
401: CVKEFSTEEE AIELANDTHY GLAGAVISGD RERCQRLAEE IDAGCIWVNC SQPCFCQAPW GGNKRSGFGR ELGEGGIDNY LSIKQVTEYT SDAPWGWYKA
501: PA

Best Arabidopsis Sequence Match ( AT1G74920.1 )
(BLAST)

001: MAIPMPTRQL FIDGEWREPI LKKRIPIVNP ATEEVIGDIP AATTEDVDVA VNAARRALSR NKGKDWAKAP GAVRAKYLRA IAAKVNERKT DLAKLEALDC
101: GKPLDEAVWD MDDVAGCFEF YADLAEGLDA KQKAPVSLPM ESFKSYVLKQ PLGVVGLITP WNYPLLMAVW KVAPSLAAGC TAILKPSELA SVTCLELADI
201: CREVGLPPGV LNVLTGFGSE AGAPLASHPG VDKIAFTGSF ATGSKVMTAA AQLVKPVSME LGGKSPLIVF DDVDLDKAAE WALFGCFWTN GQICSATSRL
301: LVHESIASEF IEKLVKWSKN IKISDPMEEG CRLGPVVSKG QYEKILKFIS TAKSEGATIL HGGSRPEHLE KGFFIEPTII TDVTTSMQIW REEVFGPVLC
401: VKTFASEDEA IELANDSHYG LGAAVISNDT ERCDRISEAF EAGIVWINCS QPCFTQAPWG GVKRSGFGRE LGEWGLDNYL SVKQVTLYTS NDPWGWYKSP
501: N

Arabidopsis Description

ALDH10A8ALDH10A8 [Source:UniProtKB/TrEMBL;Acc:A0A178W4Y2]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.