Factsheet for PGSC0003DMT400027691

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062
cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0132g00200.t01	Wine grape	mitochondrion	83.43	83.12
CDX81452	Canola	mitochondrion	81.01	82.54
KRH10621	Soybean	cytosol	79.33	82.4
Bra037214.1-P	Field mustard	mitochondrion	80.82	82.35
KRH49851	Soybean	mitochondrion	82.31	82.31
CDY37216	Canola	mitochondrion	80.63	82.16
KRH42067	Soybean	mitochondrion	82.12	81.52
GSMUA_Achr4P22360_001	Banana	mitochondrion	77.84	77.7
HORVU2Hr1G107520.1	Barley	cytosol, peroxisome	45.81	77.12
Os07t0188800-01	Rice	mitochondrion	75.05	75.47
Zm00001d019054_P001	Maize	mitochondrion	74.86	74.86
EER95994	Sorghum	mitochondrion	75.05	74.63
TraesCS2A01G477900.1	Wheat	mitochondrion	73.74	74.3
TraesCS2B01G501200.1	Wheat	golgi, mitochondrion, unclear	73.74	74.16
TraesCS2D01G477100.2	Wheat	golgi, mitochondrion	73.37	73.78
AT2G14170.1	Thale cress	mitochondrion	81.38	71.99
KRH21731	Soybean	cytosol	40.78	70.19
HORVU2Hr1G107550.1	Barley	plasma membrane	73.18	67.76
VIT_03s0132g00230.t01	Wine grape	cytosol	54.75	50.87
PGSC0003DMT400000852	Potato	cytosol	29.05	31.2
PGSC0003DMT400083025	Potato	cytosol	28.12	29.96
PGSC0003DMT400063205	Potato	cytosol, peroxisome, plastid	27.37	29.11
PGSC0003DMT400010555	Potato	mitochondrion	28.12	28.54
PGSC0003DMT400062930	Potato	cytosol	28.31	28.41
PGSC0003DMT400044163	Potato	plastid	26.82	28.07
PGSC0003DMT400037582	Potato	mitochondrion	28.12	25.42
PGSC0003DMT400028915	Potato	cytosol	23.28	25.2
PGSC0003DMT400010556	Potato	plastid	10.99	24.58
PGSC0003DMT400058895	Potato	cytosol	21.42	22.59
PGSC0003DMT400011970	Potato	endoplasmic reticulum, extracellular, vacuole	20.3	18.38

Protein Annotations

KEGG:00280+1.2.1.27	KEGG:00640+1.2.1.27	EntrezGene:102600700	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.7.6.3
InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004491	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163
UniProt:M1AQ24	InterPro:MeMal-semiAld_DH	PFAM:PF00171	EnsemblPlantsGene:PGSC0003DMG402010673	PGSC:PGSC0003DMG402010673	EnsemblPlants:PGSC0003DMT400027691
ScanProsite:PS00070	PANTHER:PTHR43866	PANTHER:PTHR43866:SF5	SUPFAM:SSF53720	TIGRFAMs:TIGR01722	UniParc:UPI0002964601
RefSeq:XP_015166112.1	SEG:seg	:	:	:	:

Description

Methylmalonate-semialdehyde dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG402010673]

Coordinates

chr1:-:82766951..82772932

Molecular Weight (calculated)

57779.4 Da

IEP (calculated)

6.979

GRAVY (calculated)

-0.042

Length

537 amino acids

Sequence
(BLAST)

001: MMQFSVHRVR KVRSLTPGIF ALANHHFSVA TESSWKHRTS LRVPNLIGGS FVDSQSSEFV DVINPATQEV VSQIPLTTDK EFKSAVSAAK EAFPSWKNTP
101: ITTRQRVMLK FQELIRKNMD KLAFNVTTEQ GKTLKDAQGD VFRGLEVVEH ACGMATLQMG EYVSNVSNGI DTYSLREPLG VCAGICPFNF PAMIPLWMFP
201: VAATCGNTFI LKPSEKDPGA SMMLAELAME AGLPDGVLNI VHGTHDVVNA ICDDDDIRAI SFVGSNTAGM HIYSRASAKG KRVQSNMGAK NHGVVMPDAN
301: IDSTINALVA AGFGAAGQRC MALSTVVFVG DSKPWEEKLL ERAKTLKVSA GTEPDADLGP VISKQAKERV CQLVQSGVDS GAKLLLDGRD IVVPGYEKGN
401: FVGPTILSGV TPDMECYKEE IFGPVLLCMQ ANSLDEAINI VNQNKYGNGA AIFTTSGVAA RRFQTEIESG QIGINVPIPV PLPFFSFTGS KASFAGDLNF
501: YGKAGVQFYT QIKTVTQQWK DLSGGSGVSL AMPTSQK

Best Arabidopsis Sequence Match ( AT2G14170.1 )
(BLAST)

001: MVRVKQKNLE SYRSNGTYPP TWRNPTTSFA PDQHRVSIHS SLKSKTKRRR LYKEADDNTK LRSSSSTTTT TTTMLLRISG NNLRPLRPQF LALRSSWLST
101: SPEQSTQPQM PPRVPNLIGG SFVESQSSSF IDVINPATQE VVSKVPLTTN EEFKAAVSAA KQAFPLWRNT PITTRQRVML KFQELIRKNM DKLAMNITTE
201: QGKTLKDSHG DIFRGLEVVE HACGMATLQM GEYLPNVSNG VDTYSIREPL GVCAGICPFN FPAMIPLWMF PVAVTCGNTF ILKPSEKDPG ASVILAELAM
301: EAGLPDGVLN IVHGTNDTVN AICDDEDIRA VSFVGSNTAG MHIYARAAAK GKRIQSNMGA KNHGLVLPDA NIDATLNALL AAGFGAAGQR CMALSTVVFV
401: GDAKSWEDKL VERAKALKVT CGSEPDADLG PVISKQAKER ICRLIQSGVD DGAKLLLDGR DIVVPGYEKG NFIGPTILSG VTPDMECYKE EIFGPVLVCM
501: QANSFDEAIS IINKNKYGNG AAIFTSSGAA ARKFQMDIEA GQIGINVPIP VPLPFFSFTG NKASFAGDLN FYGKAGVDFF TQIKTVTQQW KDIPTSVSLA
601: MPTSQKQ

Arabidopsis Description

ALDH6B2Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WM29]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.