Factsheet for PGSC0003DMT400062930

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114150.2.1	Tomato	plastid	97.76	97.76
KRH03318	Soybean	mitochondrion	70.84	84.04
VIT_17s0000g08070.t01	Wine grape	mitochondrion	82.24	81.78
KRH54419	Soybean	nucleus	81.68	80.93
PGSC0003DMT400010555	Potato	mitochondrion	77.57	78.45
GSMUA_Achr5P05290_001	Banana	mitochondrion	79.25	78.23
AT1G23800.1	Thale cress	mitochondrion	77.38	77.53
CDY57318	Canola	mitochondrion	77.57	77.28
Bra016330.1-P	Field mustard	mitochondrion	77.2	76.91
CDX91724	Canola	mitochondrion	77.2	76.91
GSMUA_Achr3P06170_001	Banana	mitochondrion	76.45	76.88
KXG19772	Sorghum	mitochondrion	79.63	76.62
Bra024619.1-P	Field mustard	mitochondrion	76.64	76.49
TraesCS7A01G210100.1	Wheat	mitochondrion	78.32	76.32
TraesCS7D01G211900.1	Wheat	mitochondrion	78.13	76.14
TraesCS7B01G116800.1	Wheat	mitochondrion	78.5	76.09
HORVU7Hr1G042880.1	Barley	mitochondrion	77.94	75.96
Os06t0270900-01	Rice	mitochondrion	77.57	75.59
CDY47634	Canola	mitochondrion	76.82	75.55
KRH63505	Soybean	mitochondrion	62.43	75.23
HORVU6Hr1G072830.2	Barley	peroxisome	71.4	74.46
PGSC0003DMT400010556	Potato	plastid	32.9	73.33
CDY61548	Canola	cytosol, peroxisome	75.51	72.79
TraesCS6B01G321400.1	Wheat	mitochondrion	58.32	72.73
KXG30827	Sorghum	mitochondrion, plastid	74.58	72.41
TraesCS6D01G272400.1	Wheat	mitochondrion	73.46	72.11
Os02t0730000-02	Rice	mitochondrion	73.64	71.25
Zm00001d045706_P001	Maize	mitochondrion	77.57	70.82
Zm00001d051754_P003	Maize	cytosol	74.02	68.39
PGSC0003DMT400037582	Potato	mitochondrion	74.39	67.0
PGSC0003DMT400000852	Potato	cytosol	51.96	55.6
PGSC0003DMT400063205	Potato	cytosol, peroxisome, plastid	36.82	39.01
PGSC0003DMT400044163	Potato	plastid	36.26	37.82
PGSC0003DMT400083025	Potato	cytosol	34.77	36.9
PGSC0003DMT400028915	Potato	cytosol	28.41	30.65
PGSC0003DMT400027691	Potato	mitochondrion	28.41	28.31
PGSC0003DMT400058895	Potato	cytosol	24.86	26.13
PGSC0003DMT400011970	Potato	endoplasmic reticulum, extracellular, vacuole	26.92	24.28

Protein Annotations

EntrezGene:102591315	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:50.1.2	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C
InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0016491	GO:GO:0016620	GO:GO:0046686	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163
UniProt:M1C9T0	PFAM:PF00171	EnsemblPlantsGene:PGSC0003DMG400024490	PGSC:PGSC0003DMG400024490	EnsemblPlants:PGSC0003DMT400062930	ScanProsite:PS00070
ScanProsite:PS00687	PANTHER:PTHR11699	PANTHER:PTHR11699:SF225	SUPFAM:SSF53720	UniParc:UPI000294C646	RefSeq:XP_006345041.1
SEG:seg	:	:	:	:	:

Description

Aldehyde dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400024490]

Coordinates

chr3:+:54002305..54007157

Molecular Weight (calculated)

58336.9 Da

IEP (calculated)

8.023

GRAVY (calculated)

-0.110

Length

535 amino acids

Sequence
(BLAST)

001: MAARRLSSLL SRSLHLPSAS ASLGRSHGVA RHINRFSTAA AVEELITPPV QVNHTKLLIN GQFVDSASGK TFPTLDPRTG EVIANVAEGD LEDVNRAVAA
101: ARKAFDEGPW PKMSAYERSR IMLKFADLVE KHNDEIAALE TWDNGKPYLQ AAQAEVPSFV RLFRYYAGWA DKIHGLTVPA DGPYHVQTLH EPIGVAGQII
201: PWNFPLLMMA WKVGPALACG NTIVLKTAEQ TPLTALYVAN LFHEAGLPPG VLNIVSGFGP TAGAALASHM DVDKLAFTGS TETGQTVLQL AAKSNLKPVT
301: LELGGKSPFI ICEDADVDHA VELAHFALFF NQGQCCCAGS RTYVHERVYD EFVEKAKARA MRRVVGDPFK KGVEQGPQID SEQFKKILRY IREGRDSSAT
401: LECGGDRIGS KGYFIQPTVF SNVKEDMSIA QDEIFGPVQC VFKFKDIGEV IKRANNTRYG LAAGVFTKNI DTANTLTRGL RAGTVWINCY DIFDAGIPFG
501: GYKMSGTGRE KGIYSLNNYL QVKAVVTPLK NPAWI

Best Arabidopsis Sequence Match ( AT3G48000.1 )
(BLAST)

001: MAARRVSSLL SRSFSASSPL LFRSQGRNCY NGGILRRFGT SSAAAEEIIN PSVQVSHTQL LINGNFVDSA SGKTFPTLDP RTGEVIAHVA EGDAEDINRA
101: VKAARTAFDE GPWPKMSAYE RSRVLLRFAD LVEKHSEELA SLETWDNGKP YQQSLTAEIP MFARLFRYYA GWADKIHGLT IPADGNYQVH TLHEPIGVAG
201: QIIPWNFPLL MFAWKVGPAL ACGNTIVLKT AEQTPLTAFY AGKLFLEAGL PPGVLNIVSG FGATAGAALA SHMDVDKLAF TGSTDTGKVI LGLAANSNLK
301: PVTLELGGKS PFIVFEDADI DKAVELAHFA LFFNQGQCCC AGSRTFVHEK VYDEFVEKSK ARALKRVVGD PFRKGIEQGP QIDLKQFEKV MKYIKSGIES
401: NATLECGGDQ IGDKGYFIQP TVFSNVKDDM LIAQDEIFGP VQSILKFSDV DEVIKRANET KYGLAAGVFT KNLDTANRVS RALKAGTVWV NCFDVFDAAI
501: PFGGYKMSGN GREKGIYSLN NYLQIKAVVT ALNKPAWI

Arabidopsis Description

ALDH2B4Aldehyde dehydrogenase family 2 member B4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SU63]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.