Factsheet for PGSC0003DMT400036929

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118100.2.1	Tomato	cytoskeleton, cytosol, nucleus	97.76	97.76
PGSC0003DMT400037433	Potato	cytosol	81.15	80.63
PGSC0003DMT400065718	Potato	cytosol, mitochondrion	70.93	80.43
KRH59720	Soybean	cytosol	70.61	70.38
KRH00830	Soybean	cytosol	27.16	70.25
KRH41047	Soybean	cytosol	69.97	69.75
KRH63893	Soybean	cytosol	69.65	69.43
VIT_00s0283g00070.t01	Wine grape	cytosol	69.33	69.33
AT5G51030.1	Thale cress	cytosol	69.01	68.79
KRH38194	Soybean	cytosol	68.69	68.69
CDY45793	Canola	cytosol	67.73	68.39
CDX84895	Canola	cytosol	67.73	68.39
Bra022746.1-P	Field mustard	cytosol	67.73	68.39
KRH54068	Soybean	cytosol	68.69	63.99
GSMUA_Achr4P15900_001	Banana	cytosol	61.98	61.39
KRG94236	Soybean	plastid	60.38	61.36
Zm00001d042250_P001	Maize	cytosol	59.11	57.1
TraesCS3D01G436600.1	Wheat	cytosol	58.47	56.83
HORVU3Hr1G096690.3	Barley	cytosol	58.47	56.83
EES04148	Sorghum	cytosol	58.79	56.79
Os01t0929500-01	Rice	cytosol	59.74	56.67
TraesCS3B01G477700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	57.83	56.39
TraesCS3A01G444300.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	57.83	56.21
PGSC0003DMT400022011	Potato	cytosol, peroxisome, plastid	16.93	43.09
PGSC0003DMT400048179	Potato	cytosol	38.02	39.8
PGSC0003DMT400026580	Potato	cytosol	39.3	39.68
PGSC0003DMT400000067	Potato	golgi, peroxisome	36.74	39.52
PGSC0003DMT400047834	Potato	cytosol	37.38	39.13
PGSC0003DMT400048181	Potato	cytosol	37.06	38.8
PGSC0003DMT400000078	Potato	cytosol	37.06	38.67
PGSC0003DMT400048175	Potato	cytosol, peroxisome, plastid	15.65	38.58
PGSC0003DMT400000080	Potato	cytosol, mitochondrion, plastid	37.38	38.24
PGSC0003DMT400088659	Potato	cytosol	14.06	37.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400036929	EnsemblPlantsGene:PGSC0003DMG400014237	EntrezGene:102604350	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
ncoils:Coil	PANTHER:PTHR43490	PANTHER:PTHR43490:SF54	PFAM:PF00106	PGSC:PGSC0003DMG400014237	PRINTS:PR00080
PRINTS:PR00081	RefSeq:XP_006341464.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000295BFA0	UniProt:M1B4I4
MapMan:50.1.1	:	:	:	:	:

Description

Short-chain dehydrogenase/reductase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014237]

Coordinates

chr3:-:57696459..57698500

Molecular Weight (calculated)

35219.9 Da

IEP (calculated)

6.268

GRAVY (calculated)

-0.282

Length

313 amino acids

Sequence
(BLAST)

001: MDKKERAKEK KEKRRQEISL LRTIPYSDHQ RWWSSETIAV VTGANRGIGF EIAHQLASHG ITVVLTSRET AVGEEAVKVF QEGGLNVAFH QLDIVDPASI
101: QTFCDWIKET YGGLDILINN AGVNFNFGKD NSVEFSEMVI QVNYFGTKNM IKALTPLMRP SPAGSRIVSV TSRLGRLNSK RNGISNVAVR EQLENVDSLS
201: EEVIDKTMNT FLEQVKDGTW ESGGWPHVFT DYSLSKLAVN AYTRLMARIF EERPEGEKIY VNCYCPGWVK TAMTGWAGHV TIEEAADTAV WLALLPDQFV
301: SGKFFAERRE INF

Best Arabidopsis Sequence Match ( AT5G51030.1 )
(BLAST)

001: MVGSKEKSKE KRDKRLQEIS LLRTIPYSDH QRWWTSETVA VVTGANRGIG FEMVRQLAGH GLTVILTSRD ENVGVEAAKI LQEGGFNVDF HRLDILDSSS
101: IQEFCEWIKE KYGFIDVLIN NAGVNYNVGS DNSVEFSHMV ISTNYYGTKN IINAMIPLMR HACQGARIVN VTSRLGRLKG RHSKLENEDV RAKLMDVDSL
201: TEEIVDKTVS EFLKQVEEGT WESGGWPHSF TDYSVSKMAV NAYTRVLAKE LSERPEGEKI YANCFCPGWV KTAMTGYAGN VSAEDGADTG VWLALLPDQA
301: ITGKFFAERR EISF

Arabidopsis Description

At5g51030 [Source:UniProtKB/TrEMBL;Acc:Q9FI45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.