CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84895	Canola	cytosol	99.35	99.35
AT5G51030.1	Thale cress	cytosol	93.55	92.36
KRH00830	Soybean	cytosol	27.42	70.25
KRH59720	Soybean	cytosol	70.65	69.75
KRH41047	Soybean	cytosol	70.32	69.43
KRH63893	Soybean	cytosol	69.03	68.15
Solyc12g042370.1.1	Tomato	cytosol	69.03	67.94
PGSC0003DMT400036929	Potato	cytoskeleton, cytosol, nucleus	68.39	67.73
VIT_00s0283g00070.t01	Wine grape	cytosol	68.39	67.73
PGSC0003DMT400037433	Potato	cytosol	68.39	67.3
Solyc03g118100.2.1	Tomato	cytoskeleton, cytosol, nucleus	67.74	67.09
PGSC0003DMT400065718	Potato	cytosol, mitochondrion	59.03	66.3
Solyc06g068740.2.1	Tomato	cytosol	65.81	65.18
CDY00233	Canola	cytosol	66.13	64.87
CDY53157	Canola	cytosol	65.81	64.56
KRH38194	Soybean	cytosol	64.19	63.58
KRH54068	Soybean	cytosol	68.39	63.1
KRG94236	Soybean	plastid	58.06	58.44
GSMUA_Achr4P15900_001	Banana	cytosol	58.71	57.59
Zm00001d042250_P001	Maize	cytosol	57.1	54.63
EES04148	Sorghum	cytosol	57.1	54.63
TraesCS3D01G436600.1	Wheat	cytosol	56.13	54.04
TraesCS3B01G477700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	55.48	53.58
TraesCS3A01G444300.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	55.48	53.42
HORVU3Hr1G096690.3	Barley	cytosol	55.16	53.11
Os01t0929500-01	Rice	cytosol	56.45	53.03
CDY05983	Canola	cytosol, peroxisome, plastid	43.23	45.89
CDX71880	Canola	peroxisome	42.9	45.55
CDX67809	Canola	peroxisome	42.58	44.75
CDX90062	Canola	cytosol	38.39	40.34
CDY48937	Canola	cytosol	38.06	39.86
CDY15148	Canola	cytosol	37.74	39.66
CDX71758	Canola	cytosol	37.42	39.19
CDX89104	Canola	cytosol	33.55	37.68
CDY56927	Canola	endoplasmic reticulum, golgi	36.77	37.25

Protein Annotations

EnsemblPlants:CDY45793	EnsemblPlantsGene:GSBRNA2T00082723001	Gene3D:3.40.50.720	GO:A0A078I9H8	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR43490	PANTHER:PTHR43490:SF54	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ProteinID:CDY45793
ProteinID:CDY45793.1	SUPFAM:SSF51735	UniParc:UPI0004EB9363	UniProt:A0A078I9H8	MapMan:50.1.1	:

Description

BnaC03g16160DBnaC03g16160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9H8]

Coordinates

chrLK032637:+:7291..8675

Molecular Weight (calculated)

34563.0 Da

IEP (calculated)

6.408

GRAVY (calculated)

-0.306

Length

310 amino acids

Sequence
(BLAST)

001: MVGSKEKRDK RLQQVSLLRT IPYSDHQRWW TSETVAVVTG ANRGIGFEMV KQLAGHGLTV ILTSRDENVG VEAAKVLQEG GFNVDFHRLD ILDTSSIQDF
101: CQWIKEKYGF IDVLINNAGV NYNVGTHNSV EYSHMVISTN YNGTKNIIKA MIPLMRQASP GARIVNVTSR LGRLKGRHSK LENEAVRAKL MDVDSLTEEA
201: IDETVSEFLK QVEEGTWESG GWPHSFTDYS VSKMAVNAYT RVLAKELSER PEGEKIYANC FCPGWVKTAM TGYAGNISAE DGADTGVWLA LLPDQAITGK
301: FFAERREISF

Best Arabidopsis Sequence Match ( AT5G51030.1 )
(BLAST)

001: MVGSKEKSKE KRDKRLQEIS LLRTIPYSDH QRWWTSETVA VVTGANRGIG FEMVRQLAGH GLTVILTSRD ENVGVEAAKI LQEGGFNVDF HRLDILDSSS
101: IQEFCEWIKE KYGFIDVLIN NAGVNYNVGS DNSVEFSHMV ISTNYYGTKN IINAMIPLMR HACQGARIVN VTSRLGRLKG RHSKLENEDV RAKLMDVDSL
201: TEEIVDKTVS EFLKQVEEGT WESGGWPHSF TDYSVSKMAV NAYTRVLAKE LSERPEGEKI YANCFCPGWV KTAMTGYAGN VSAEDGADTG VWLALLPDQA
301: ITGKFFAERR EISF

Arabidopsis Description

At5g51030 [Source:UniProtKB/TrEMBL;Acc:Q9FI45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.