CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
plastid 1
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05983	Canola	cytosol, peroxisome, plastid	94.86	94.86
CDX67809	Canola	peroxisome	86.64	85.76
AT3G59710.2	Thale cress	cytosol, peroxisome, plastid	80.82	73.52
VIT_05s0094g00770.t01	Wine grape	cytosol	59.59	58.59
TraesCS2D01G350600.1	Wheat	peroxisome	57.88	57.88
HORVU2Hr1G085650.1	Barley	cytosol, peroxisome	46.58	57.63
TraesCS2A01G353500.1	Wheat	peroxisome	57.53	57.53
TraesCS2B01G371400.1	Wheat	peroxisome	56.85	56.85
KRH71272	Soybean	cytosol, mitochondrion, peroxisome	58.22	56.11
PGSC0003DMT400022011	Potato	cytosol, peroxisome, plastid	23.63	56.1
KRH50192	Soybean	cytosol	57.88	55.78
GSMUA_Achr8P28970_001	Banana	peroxisome	56.16	55.59
HORVU6Hr1G055660.3	Barley	cytosol, peroxisome, plastid	54.79	54.79
TraesCS6B01G247400.1	Wheat	peroxisome	54.11	54.11
Zm00001d025761_P002	Maize	mitochondrion	53.77	53.77
Os02t0607700-01	Rice	cytosol, peroxisome, plastid	54.79	53.69
Solyc03g059190.2.1	Tomato	cytosol, peroxisome, plastid	54.45	53.54
OQU81866	Sorghum	cytosol, peroxisome, plastid	53.08	53.45
TraesCS6A01G218000.1	Wheat	peroxisome	53.42	53.42
TraesCS6D01G200400.1	Wheat	peroxisome	53.42	53.42
Zm00001d003174_P001	Maize	extracellular, mitochondrion	53.42	53.06
EES07125	Sorghum	cytosol, peroxisome, plastid	53.42	50.32
Zm00001d051041_P001	Maize	peroxisome	54.11	50.0
Os04t0496000-01	Rice	cytosol, peroxisome	22.95	47.18
CDY45793	Canola	cytosol	45.55	42.9
CDX84895	Canola	cytosol	45.55	42.9
CDY00233	Canola	cytosol	44.18	40.82
CDY53157	Canola	cytosol	44.18	40.82
Os04t0496150-00	Rice	cytosol	21.23	38.99
Zm00001d003173_P001	Maize	cytosol	50.34	38.58
CDY15148	Canola	cytosol	37.67	37.29
CDX90062	Canola	cytosol	36.99	36.61
CDX89104	Canola	cytosol	33.22	35.14
CDY48937	Canola	cytosol	35.62	35.14
CDY56927	Canola	endoplasmic reticulum, golgi	36.3	34.64
CDX71758	Canola	cytosol	34.25	33.78

Protein Annotations

EnsemblPlants:CDX71880	EnsemblPlantsGene:GSBRNA2T00155617001	Gene3D:3.40.50.720	GO:A0A078C4U2	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR43490	PANTHER:PTHR43490:SF8	PFAM:PF00106	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081
ProteinID:CDX71880	ProteinID:CDX71880.1	SUPFAM:SSF51735	UniParc:UPI0004EE986D	MapMan:50.1.1	:

Description

BnaC08g29940D

Coordinates

chrLK031795:+:988192..989631

Molecular Weight (calculated)

32275.9 Da

IEP (calculated)

9.873

GRAVY (calculated)

-0.043

Length

292 amino acids

Sequence
(BLAST)

001: MDHLIYPLPP TSRWWSKGTT AVVTGANKGI GFEVVKKLLE LGLTVVLTAR NAKNGSLAAD SLRRAGFQNV HFYCLDVSDP SSIAAFVSWF RHNFGVLDIL
101: VNNAAVSFNA VGDNSIKEPE TIIKTNFYGA KLLTEALLPL FRRLVSVSRI LNISSRLGSL NKLRNPSVRQ TLESEELNNE QIDATVTQFL EDVSSGTWEK
201: KGWPENWSDY AVSKMALNAY SRVLARLYNG KKLSVNCFCP GFTRTSMTGG QGTHTAEDVA ATIATLVLLP PEKLTSGKFF MFLEHKKIIS RL

Best Arabidopsis Sequence Match ( AT3G59710.3 )
(BLAST)

001: MNHLIPPLSP TNRWWSEETT AVVTGANKGI GFAVVKRLLE LGLTVVLTAR NAENGSQAAE SLRRIGFGNV HFCCLDISDP SSIAAFASWF GRNLGILDIL
101: VNNAAVSFNA VGENLIKEPE TIIKTNFYGA KLLTEALLPL FRRSVSVSRI LNMSSRLGTL NKLRSPSIRR ILESEDLTNE QIDATLTQFL QDVKSGTWEK
201: QGWPENWPDY AISKLALNAY SRVLARRYDG KKLSVNCLCP GFTRTSMTGG QGTHTADEAA AIVAKLVLLP PEKLATGKFY ICVESKKLIS KL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ55]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.