Factsheet for PGSC0003DMT400067636

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006690.1.1	Tomato	nucleus	97.14	87.63
VIT_07s0005g00480.t01	Wine grape	extracellular	62.29	55.61
KRH68192	Soybean	extracellular	55.43	49.24
CDX76665	Canola	plastid	52.57	48.68
Bra007704.1-P	Field mustard	extracellular, plastid	52.0	48.15
CDY11451	Canola	extracellular, plastid	51.43	47.62
AT3G62820.1	Thale cress	extracellular	49.14	44.33
CDY53010	Canola	extracellular, plasma membrane	49.14	41.75
CDX80124	Canola	extracellular, vacuole	49.14	41.75
Bra004439.1-P	Field mustard	extracellular, vacuole	49.14	41.75
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular	45.14	39.9
AT2G47670.1	Thale cress	endoplasmic reticulum, plasma membrane	44.57	37.5
Bra021439.1-P	Field mustard	extracellular, plastid	41.71	35.96
PGSC0003DMT400032573	Potato	cytosol	20.0	31.82
PGSC0003DMT400012073	Potato	plastid	33.14	31.69
PGSC0003DMT400031363	Potato	plastid	33.14	28.86
PGSC0003DMT400035274	Potato	extracellular	30.86	28.57
PGSC0003DMT400031362	Potato	extracellular	32.57	28.08
PGSC0003DMT400072092	Potato	endoplasmic reticulum, extracellular, vacuole	31.43	27.78
PGSC0003DMT400007510	Potato	extracellular	30.29	27.32
PGSC0003DMT400055550	Potato	extracellular	29.71	27.08
PGSC0003DMT400028031	Potato	extracellular	29.71	26.53
PGSC0003DMT400028042	Potato	endoplasmic reticulum, extracellular	31.43	26.32
PGSC0003DMT400049198	Potato	extracellular	30.29	25.24
PGSC0003DMT400031359	Potato	endoplasmic reticulum, extracellular	27.43	24.87
PGSC0003DMT400003231	Potato	mitochondrion	22.86	24.84
PGSC0003DMT400066783	Potato	extracellular	28.57	24.27
PGSC0003DMT400071010	Potato	extracellular	26.29	23.47
PGSC0003DMT400028038	Potato	endoplasmic reticulum, extracellular	25.14	22.8
PGSC0003DMT400028039	Potato	extracellular	25.71	13.31

Protein Annotations

EnsemblPlants:PGSC0003DMT400067636	EnsemblPlantsGene:PGSC0003DMG400026302	Gene3D:1.20.140.40	GO:GO:0003674	GO:GO:0004857	GO:GO:0008150
GO:GO:0030234	GO:GO:0043086	InterPro:IPR035513	InterPro:Invertase/methylesterase_inhib	InterPro:Pectinesterase_inhib_dom	PANTHER:PTHR31080
PANTHER:PTHR31080:SF16	PFAM:PF04043	PGSC:PGSC0003DMG400026302	SMART:SM00856	SUPFAM:SSF101148	TIGRFAMs:TIGR01614
UniParc:UPI000296A118	UniProt:M1CHL2	MapMan:35.1	:	:	:

Description

Pectinesterase [Source:PGSC_GENE;Acc:PGSC0003DMG400026302]

Coordinates

chr8:-:1919001..1919998

Molecular Weight (calculated)

19118.0 Da

IEP (calculated)

8.893

GRAVY (calculated)

-0.258

Length

175 amino acids

Sequence
(BLAST)

001: MCLSKGGESY VRDACSVTRY QDLCLHSLAS FSRTAKDNPS KWARAGVSVT ISQAKGVTQS LLKLRKNNFL KGKGRVAILD CVDCLQDALD NLHNSLGVLR
101: KLSSQTFNDQ MGDVTTWLSA ALTDEDTCLD GLEDKKRKQV KLLLNKVTNV SYMTSNALAL VNKLATTGPQ CLENS

Best Arabidopsis Sequence Match ( AT3G62820.1 )
(BLAST)

001: MKTPMSSSIT FALVFFLLSL NPTSSLPSKR ESYVQNACSV TRYQDLCAKT LLPFASVAKN SPSKWARAGV SVAITDNKDV LRHLLKTRLS TIGKRDRIAL
101: SDCRELLQDS LDSLHKSLAV LRTLRASEFQ QQMSDLATWL SSSLTDKDTC LDGFEKTSTR SSSTVRMIRK RVTTSMYLSS NSLALLNKLA ANGL

Arabidopsis Description

Plant invertase/pectin methylesterase inhibitor superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LZI3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.