Factsheet for PGSC0003DMT400055550

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g034370.1.1	Tomato	extracellular	91.15	91.15
PGSC0003DMT400028031	Potato	extracellular	64.58	63.27
VIT_16s0022g00960.t01	Wine grape	extracellular, vacuole	57.29	55.56
KRH62602	Soybean	nucleus	55.21	54.92
KRH56361	Soybean	plastid	54.69	53.03
PGSC0003DMT400012073	Potato	plastid	48.96	51.37
Bra018157.1-P	Field mustard	plastid	48.96	50.81
CDX86904	Canola	extracellular	53.65	50.49
AT5G62350.1	Thale cress	extracellular	52.6	50.0
Bra010075.1-P	Field mustard	extracellular	52.6	49.51
CDY00278	Canola	extracellular	52.6	49.51
CDY70789	Canola	extracellular	51.04	48.51
CDX99059	Canola	extracellular	51.04	48.51
CDY30715	Canola	endoplasmic reticulum, extracellular	50.52	48.26
Bra029267.1-P	Field mustard	endoplasmic reticulum, extracellular	50.52	48.26
AT3G47380.1	Thale cress	extracellular	49.48	47.03
PGSC0003DMT400032573	Potato	cytosol	26.04	45.45
CDY11066	Canola	extracellular	47.4	45.27
CDX89429	Canola	extracellular	47.4	45.27
CDX92687	Canola	extracellular	46.88	44.78
Bra019179.1-P	Field mustard	extracellular	46.88	44.78
Bra013881.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	46.88	44.55
PGSC0003DMT400072092	Potato	endoplasmic reticulum, extracellular, vacuole	45.83	44.44
CDX94463	Canola	extracellular	46.35	44.28
AT4G25260.1	Thale cress	endoplasmic reticulum, extracellular	46.35	44.28
PGSC0003DMT400031363	Potato	plastid	45.31	43.28
PGSC0003DMT400031362	Potato	extracellular	43.75	41.38
GSMUA_Achr3P26730_001	Banana	extracellular	36.98	41.04
PGSC0003DMT400031359	Potato	endoplasmic reticulum, extracellular	40.62	40.41
GSMUA_Achr11P...	Banana	extracellular	34.9	40.12
GSMUA_Achr8P12460_001	Banana	extracellular	34.9	39.41
Os06t0711800-01	Rice	extracellular	40.1	38.5
GSMUA_Achr1P00870_001	Banana	extracellular	33.33	38.1
TraesCS7D01G400200.1	Wheat	extracellular, golgi	39.58	37.25
TraesCS7B01G306500.1	Wheat	extracellular, golgi	39.58	37.25
TraesCS7A01G406500.1	Wheat	extracellular, golgi	39.58	37.07
PGSC0003DMT400035274	Potato	extracellular	36.46	37.04
PGSC0003DMT400066783	Potato	extracellular	39.58	36.89
KXG20844	Sorghum	extracellular	38.54	36.63
HORVU7Hr1G095080.4	Barley	mitochondrion, plastid	38.54	36.27
Os04t0106000-01	Rice	extracellular	33.33	36.16
PGSC0003DMT400028042	Potato	endoplasmic reticulum, extracellular	38.02	34.93
Zm00001d014757_P001	Maize	extracellular, vacuole	38.54	34.58
KXG20845	Sorghum	extracellular	39.06	34.56
GSMUA_Achr5P12890_001	Banana	endoplasmic reticulum	32.29	34.07
Zm00001d036431_P001	Maize	extracellular	39.06	33.94
PGSC0003DMT400007510	Potato	extracellular	33.85	33.51
PGSC0003DMT400003231	Potato	mitochondrion	27.6	32.92
PGSC0003DMT400049198	Potato	extracellular	35.42	32.38
Zm00001d024913_P001	Maize	extracellular	33.33	31.53
EES11737	Sorghum	extracellular	33.85	30.37
PGSC0003DMT400067636	Potato	cytosol	27.08	29.71
PGSC0003DMT400071010	Potato	extracellular	29.69	29.08
PGSC0003DMT400028038	Potato	endoplasmic reticulum, extracellular	29.17	29.02
TraesCS2D01G035100.1	Wheat	extracellular	30.73	27.7
TraesCS2A01G036100.1	Wheat	extracellular	30.21	27.36
TraesCS2B01G049000.1	Wheat	extracellular	29.17	26.29
PGSC0003DMT400028039	Potato	extracellular	30.73	17.46

Protein Annotations

Gene3D:1.20.140.40	EntrezGene:102584206	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0004857
GO:GO:0008150	GO:GO:0030234	GO:GO:0043086	InterPro:IPR035513	InterPro:Invertase/methylesterase_inhib	UniProt:M1BY49
PFAM:PF04043	EnsemblPlantsGene:PGSC0003DMG400021574	PGSC:PGSC0003DMG400021574	EnsemblPlants:PGSC0003DMT400055550	PANTHER:PTHR31080	PANTHER:PTHR31080:SF31
InterPro:Pectinesterase_inhib_dom	SMART:SM00856	SUPFAM:SSF101148	SignalP:SignalP-noTM	TIGRFAMs:TIGR01614	UniParc:UPI0002951007
RefSeq:XP_006357906.1	:	:	:	:	:

Description

21kD protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021574]

Coordinates

chr6:-:36214132..36214889

Molecular Weight (calculated)

21093.6 Da

IEP (calculated)

10.583

GRAVY (calculated)

-0.056

Length

192 amino acids

Sequence
(BLAST)

001: MAALKLIVLA AFLSLFNFTA NSTALPTSFI KSSCKITTYP QVCVSSLAVY APTIKRSPQQ LAQTALSVSL DRAQSAHTFI TKLNKFKGLK QREYAALKDC
101: LEEMSETIDR INKSVKELKS MGSARGKDFQ WRMSNIETWI SAAITNENTC ADGFAGRALN GRIKTSIRAR VTHVTQVTSN ALALINQFAA KH

Best Arabidopsis Sequence Match ( AT5G62350.1 )
(BLAST)

001: MAKQYLFVLL SISYLLSLEL TAATAASQTG ASKKAINFIQ SSCKTTTYPA LCVHSLSVYA NDIQTSPKRL AETAIAVTLS RAQSTKLFVS RLTRMKGLKK
101: REVEAIKDCV EEMNDTVDRL TKSVQELKLC GSAKDQDQFA YHMSNAQTWT SAALTDENTC SDGFSGRVMD GRIKNSVRAR IMNVGHETSN ALSLINAFAK
201: TY

Arabidopsis Description

Plant invertase/pectin methylesterase inhibitor superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LVA4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.