Factsheet for PGSC0003DMT400075618

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g094500.1.1	Tomato	cytosol	95.63	95.63
PGSC0003DMT400025617	Potato	cytosol	77.38	77.58
VIT_18s0001g00380.t01	Wine grape	cytosol	76.35	77.55
KRG89834	Soybean	cytosol	70.44	69.9
KRH14690	Soybean	cytosol	69.15	69.51
AT5G42250.1	Thale cress	cytosol	69.15	68.97
VIT_18s0001g00410.t01	Wine grape	cytosol	69.92	68.86
Bra025081.1-P	Field mustard	cytosol	68.38	68.38
CDY39423	Canola	cytosol	67.87	67.87
CDY64947	Canola	cytosol	67.61	67.61
KRH73443	Soybean	cytosol	66.58	67.1
KRH73446	Soybean	cytosol	66.32	66.67
PGSC0003DMT400079175	Potato	cytosol	59.64	59.95
PGSC0003DMT400079071	Potato	cytosol	49.87	51.05
PGSC0003DMT400063937	Potato	cytosol	49.36	50.66
PGSC0003DMT400031884	Potato	cytosol	47.81	48.95
PGSC0003DMT400019942	Potato	cytosol	47.56	48.81
KRH14696	Soybean	cytosol	16.45	48.48
PGSC0003DMT400047760	Potato	cytosol	42.16	43.85
PGSC0003DMT400038525	Potato	cytosol	41.9	43.24
PGSC0003DMT400038529	Potato	cytosol	34.7	42.19
PGSC0003DMT400038526	Potato	cytosol	32.13	41.12
PGSC0003DMT400059936	Potato	plastid	27.51	24.77
PGSC0003DMT400081907	Potato	cytosol	21.59	24.28
PGSC0003DMT400065063	Potato	cytosol	22.11	24.23

Protein Annotations

EntrezGene:102581826	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	InterPro:ADH_C	InterPro:ADH_N
InterPro:ADH_Zn_CS	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:M1CVI0
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	EnsemblPlantsGene:PGSC0003DMG400029412	PGSC:PGSC0003DMG400029412	EnsemblPlants:PGSC0003DMT400075618
ScanProsite:PS00059	PANTHER:PTHR43880	PANTHER:PTHR43880:SF7	SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI00029657E1
RefSeq:XP_006342549.1	RefSeq:XP_015162083.1	:	:	:	:

Description

Alcohol dehydrogenase ADH [Source:PGSC_GENE;Acc:PGSC0003DMG400029412]

Coordinates

chr12:+:57345766..57349927

Molecular Weight (calculated)

42319.2 Da

IEP (calculated)

6.495

GRAVY (calculated)

0.066

Length

389 amino acids

Sequence
(BLAST)

001: MAATQAELSK TAGKPIHCRA AVARKAGEPL VIEEVIVAPP KSCEVRIKII CTSLCHSDVT FWKLKDFPGS FPRILGHEAF GIVESVGENV QDLKEGDSVI
101: PIFLPDCTEC IDCTSKKSNN CSKFQFKVSP WMLRDDTSRF TTVDGETLYH FLSVSSFTEY TVVDIANVTK IDPRVPPNRA CLFSCGVSTG VGAALKTANV
201: EQGSTVVIFG LGGIGLAVAE GSRICGASRI IGVDINTDKF EIGKQFGVTD FVNSNSYGDK PISQVINEMT NGGADYCFEC VGMGTLVQEA YACCRKGWGK
301: TIVLGVDKPG AMLTFKSFDI LHMGKTIMGS LFGGLKPKSD VPLLVKRYLD KELELDKFVT HEVSFQDINK AFDLLVEGKS LRCVIWMDK

Best Arabidopsis Sequence Match ( AT5G42250.1 )
(BLAST)

001: MENGNSSSDN KSSHKPIRCK AAVSRKAGEP LVMEEIMVAP PQPFEVRIRI ICTALCHSDV TFWKLQVPPA CFPRILGHEA IGVVESVGEN VKEVVEGDTV
101: LPTFMPDCGD CVDCKSHKSN LCSKFPFKVS PWMPRYDNSS RFTDLNGETL FHFLNVSSFS EYTVLDVANV VKIDSSIPPS RACLLSCGVS TGVGAAWETA
201: KVEKGSTVVI FGLGSIGLAV AEGARLCGAS RIIGVDINPT KFQVGQKFGV TEFVNSMTCE KNRVSEVINE MTDGGADYCF ECVGSSSLVQ EAYACCRQGW
301: GKTITLGVDK PGSQICLDSF DVLHHGKILM GSLFGGLKAK THIPILLKRY LSNELELDKF VTHEMKFEEI NDAFQLLLEG KCIRCVLWMG

Arabidopsis Description

Alcohol dehydrogenase-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.