Factsheet for PGSC0003DMT400063937

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g064710.2.1	Tomato	cytosol, plastid	98.42	98.42
PGSC0003DMT400079071	Potato	cytosol	85.49	85.26
Bra015693.1-P	Field mustard	cytosol	84.7	84.7
CDX87542	Canola	cytosol	84.7	84.7
CDX88342	Canola	cytosol	84.7	84.7
AT1G77120.1	Thale cress	cytosol	84.7	84.7
KRH64550	Soybean	endoplasmic reticulum	84.17	83.95
KRH53384	Soybean	cytosol, endoplasmic reticulum, mitochondrion	83.64	83.2
KRH15944	Soybean	endoplasmic reticulum	80.74	80.53
GSMUA_Achr11P...	Banana	cytosol	83.38	80.0
CDX68065	Canola	cytosol	79.68	79.68
Bra003690.1-P	Field mustard	cytosol	79.42	79.42
CDX79188	Canola	cytosol	79.42	79.42
KRH18052	Soybean	cytosol	74.93	74.93
KRH16454	Soybean	cytosol	72.82	74.39
VIT_18s0001g15450.t01	Wine grape	mitochondrion	83.38	74.0
PGSC0003DMT400019942	Potato	cytosol	57.52	57.52
PGSC0003DMT400031884	Potato	cytosol	51.72	51.58
PGSC0003DMT400025617	Potato	cytosol	51.72	50.52
PGSC0003DMT400075618	Potato	cytosol	50.66	49.36
PGSC0003DMT400079175	Potato	cytosol	49.08	48.06
PGSC0003DMT400038529	Potato	cytosol	35.88	42.5
PGSC0003DMT400038525	Potato	cytosol	41.95	42.18
PGSC0003DMT400038526	Potato	cytosol	32.98	41.12
PGSC0003DMT400047760	Potato	cytosol	40.11	40.64
PGSC0003DMT400081907	Potato	cytosol	23.48	25.72
PGSC0003DMT400059936	Potato	plastid	27.7	24.31
PGSC0003DMT400065063	Potato	cytosol	21.9	23.38

Protein Annotations

EntrezGene:102597889	MapMan:3.11.1.2	Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:ADH_C	InterPro:ADH_N
InterPro:ADH_Zn_CS	GO:GO:0001666	GO:GO:0003674	GO:GO:0003824	GO:GO:0004022	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005886	GO:GO:0006950	GO:GO:0006970	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009409	GO:GO:0009413	GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719
GO:GO:0009737	GO:GO:0009744	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0031000
GO:GO:0032355	GO:GO:0042542	GO:GO:0042803	GO:GO:0046686	GO:GO:0046872	GO:GO:0055114
GO:GO:1900039	InterPro:GroES-like_sf	UniProt:M1CBH0	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240
EnsemblPlantsGene:PGSC0003DMG400024849	PGSC:PGSC0003DMG400024849	EnsemblPlants:PGSC0003DMT400063937	ScanProsite:PS00059	PANTHER:PTHR43880	PANTHER:PTHR43880:SF9
SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI000294A3C4	RefSeq:XP_006356298.1	SEG:seg	:

Description

Alcohol dehydrogenase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400024849]

Coordinates

chr4:+:58258628..58261287

Molecular Weight (calculated)

41034.4 Da

IEP (calculated)

6.636

GRAVY (calculated)

-0.098

Length

379 amino acids

Sequence
(BLAST)

001: MSTAGQVIRC KAAVAWEAGK PLVIEEVDVS PPQKHEVRLK ILFTSLCHTD VYFWEAKGQT PLFPRIFGHE AGGIVESVGE GVTDLQPGDH VLPVFTGECQ
101: QCRHCKSSES NMCELLRINT DRGVMISDGQ TRFSKDGKPI YHFVGTSTFS EYTVAHSGCV TKIDPQAPLD KVCVLSCGIS TGLGATLNVA KPTRGSTVAI
201: FGLGAVGLAA AEGARLAGAS RIIGIDLNPS RFNDAKKFGV TEFVNPKDHD KPVQEVIAEM TDGGADRSVE CTGNVNAMIS AFECVHDGWG VAVLVGVPNK
301: DDAFKTHPMN LLNERTLKGT FFGNYKPKTD LPSVVAKYMN KELELEKFIT HQVPFSEINK AFDIMLKGEG LRCMITMGH

Best Arabidopsis Sequence Match ( AT1G77120.1 )
(BLAST)

001: MSTTGQIIRC KAAVAWEAGK PLVIEEVEVA PPQKHEVRIK ILFTSLCHTD VYFWEAKGQT PLFPRIFGHE AGGIVESVGE GVTDLQPGDH VLPIFTGECG
101: ECRHCHSEES NMCDLLRINT ERGGMIHDGE SRFSINGKPI YHFLGTSTFS EYTVVHSGQV AKINPDAPLD KVCIVSCGLS TGLGATLNVA KPKKGQSVAI
201: FGLGAVGLGA AEGARIAGAS RIIGVDFNSK RFDQAKEFGV TECVNPKDHD KPIQQVIAEM TDGGVDRSVE CTGSVQAMIQ AFECVHDGWG VAVLVGVPSK
301: DDAFKTHPMN FLNERTLKGT FFGNYKPKTD IPGVVEKYMN KELELEKFIT HTVPFSEINK AFDYMLKGES IRCIITMGA

Arabidopsis Description

ADH1Alcohol dehydrogenase class-P [Source:UniProtKB/Swiss-Prot;Acc:P06525]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.