CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 21107622
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21107622 doi

N Ahsan, T Nakamura, S Komatsu

National Institute of Crop Science, 2-1-18 Kannondai, Tsukuba, 305-8518, Japan.

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53384	Soybean	cytosol, endoplasmic reticulum, mitochondrion	99.21	98.95
KRH15944	Soybean	endoplasmic reticulum	91.32	91.32
KRH64058	Soybean	cytosol, endoplasmic reticulum	86.84	86.61
Bra015693.1-P	Field mustard	cytosol	85.26	85.49
CDX87542	Canola	cytosol	85.26	85.49
CDX88342	Canola	cytosol	84.74	84.96
Solyc04g064710.2.1	Tomato	cytosol, plastid	84.47	84.7
PGSC0003DMT400063937	Potato	cytosol	83.95	84.17
AT1G77120.1	Thale cress	cytosol	83.68	83.91
KRH18052	Soybean	cytosol	78.95	79.16
CDX68065	Canola	cytosol	78.68	78.89
Bra003690.1-P	Field mustard	cytosol	78.42	78.63
CDX79188	Canola	cytosol	78.42	78.63
GSMUA_Achr11P...	Banana	cytosol	81.05	77.97
KRH16454	Soybean	cytosol	76.05	77.9
VIT_18s0001g15450.t01	Wine grape	mitochondrion	84.21	74.94
KRH32257	Soybean	cytosol	56.58	56.58
KRG95774	Soybean	cytosol, nucleus	55.26	55.41
KRH67486	Soybean	nucleus	55.26	55.41
KRH19643	Soybean	cytosol	16.58	54.78
KRH08072	Soybean	cytosol	45.79	53.7
KRH38840	Soybean	cytosol	51.58	52.41
KRH62448	Soybean	cytosol, vacuole	19.47	48.68
KRH65755	Soybean	cytosol	26.84	45.74
KRH75885	Soybean	cytosol	47.89	45.73
KRH00223	Soybean	cytosol, nucleus	47.63	45.59
KRH14698	Soybean	cytosol	9.47	45.57
KRH14692	Soybean	cytosol	9.47	45.57
KRH49366	Soybean	cytosol, nucleus	47.63	45.25
KRH75889	Soybean	cytosol	47.37	45.0
KRG89834	Soybean	cytosol	46.32	44.9
KRH73443	Soybean	cytosol	45.0	44.3
KRH14690	Soybean	cytosol	44.21	43.41
KRH73446	Soybean	cytosol	43.68	42.89
KRH65756	Soybean	cytosol	18.68	41.04
KRH14696	Soybean	cytosol	14.21	40.91
KRH65753	Soybean	cytosol	20.79	40.51
KRH23995	Soybean	nucleus	39.74	40.16
KRH23997	Soybean	cytosol	38.16	40.06
KRH75887	Soybean	cytosol	20.53	39.8
KRH23996	Soybean	cytosol	39.21	39.73
KRH23989	Soybean	cytosol	39.21	39.73
KRG88472	Soybean	cytosol	14.74	37.33
KRH75888	Soybean	cytosol	13.16	36.5
KRH23988	Soybean	endoplasmic reticulum, extracellular	7.63	32.22
KRH41009	Soybean	mitochondrion, plastid	31.05	27.63
KRH59676	Soybean	mitochondrion	30.79	27.46
KRH09146	Soybean	cytosol, nucleus	23.68	24.73
KRH38627	Soybean	cytosol	23.95	19.74

Protein Annotations

EntrezGene:100783858	MapMan:3.11.1.2	Gene3D:3.40.50.720	Gene3D:3.90.180.10	UniProt:A0A0R4J364	EMBL:ACUP02002767
InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS	EnsemblPlantsGene:GLYMA_04G240800	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0046872
GO:GO:0055114	InterPro:GroES-like_sf	EnsemblPlants:KRH64550	ProteinID:KRH64550	ProteinID:KRH64550.1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00107	PFAM:PF08240	ScanProsite:PS00059	PANTHER:PTHR43880	PANTHER:PTHR43880:SF9	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI0001890AF8	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:50907255..50910253

Molecular Weight (calculated)

40925.2 Da

IEP (calculated)

6.369

GRAVY (calculated)

-0.007

Length

380 amino acids

Sequence
(BLAST)

001: MSSTAGQVIK CKAAVSWEAG KPLVIEEVEV APPQAGEVRL KILYTSLCHT DVYFWEAKGQ TPLFPRIFGH EAGGIVESVG EGVTHLKPGD HALPVFTGEC
101: GDCPHCKSEE SNMCDLLRIN TDRGVMIHDS QTRFSIKGQP IYHFVGTSTF SEYTVVHAGC VAKVNPAAPL DKICVLSCGI CTGLGATINV AKPKPGSSVA
201: IFGLGAVGLA AAEGARISGA SRIIGVDLVS SRFEEAKKFG VNEFVNPKDH DKPVQEVIAA MTNGGVDRAV ECTGSIQAMI SAFECVHDGW GVAVLVGVPN
301: KDDAFKTHPV NFLNERTLKG TFYGNYKPRT DLPSVVEKYM NGELELEKFI THTVPFSEIN KAFDYMLKGE SIRCIIRMGE

Best Arabidopsis Sequence Match ( AT1G77120.1 )
(BLAST)

001: MSTTGQIIRC KAAVAWEAGK PLVIEEVEVA PPQKHEVRIK ILFTSLCHTD VYFWEAKGQT PLFPRIFGHE AGGIVESVGE GVTDLQPGDH VLPIFTGECG
101: ECRHCHSEES NMCDLLRINT ERGGMIHDGE SRFSINGKPI YHFLGTSTFS EYTVVHSGQV AKINPDAPLD KVCIVSCGLS TGLGATLNVA KPKKGQSVAI
201: FGLGAVGLGA AEGARIAGAS RIIGVDFNSK RFDQAKEFGV TECVNPKDHD KPIQQVIAEM TDGGVDRSVE CTGSVQAMIQ AFECVHDGWG VAVLVGVPSK
301: DDAFKTHPMN FLNERTLKGT FFGNYKPKTD IPGVVEKYMN KELELEKFIT HTVPFSEINK AFDYMLKGES IRCIITMGA

Arabidopsis Description

ADH1Alcohol dehydrogenase class-P [Source:UniProtKB/Swiss-Prot;Acc:P06525]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.