CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23997	Soybean	cytosol	77.13	80.11
KRH23996	Soybean	cytosol	79.79	80.0
KRH23989	Soybean	cytosol	79.79	80.0
KRH23988	Soybean	endoplasmic reticulum, extracellular	18.62	77.78
VIT_06s0004g04330.t01	Wine grape	cytosol	62.23	59.09
PGSC0003DMT400038526	Potato	cytosol	46.54	57.57
PGSC0003DMT400038525	Potato	cytosol	56.91	56.76
PGSC0003DMT400038529	Potato	cytosol	47.61	55.94
VIT_06s0004g04320.t01	Wine grape	mitochondrion, plastid	55.59	55.73
Solyc03g044200.2.1	Tomato	cytosol	55.59	55.44
VIT_16s0039g01500.t01	Wine grape	cytosol	25.8	54.49
VIT_06s0004g04310.t01	Wine grape	plastid	52.39	51.98
PGSC0003DMT400047760	Potato	cytosol	50.8	51.07
Solyc11g071290.1.1	Tomato	cytosol	51.06	51.06
KRH73443	Soybean	cytosol	45.48	44.3
KRH73446	Soybean	cytosol	45.48	44.19
KRH14690	Soybean	cytosol	44.68	43.41
KRG89834	Soybean	cytosol	44.68	42.86
KRH14692	Soybean	cytosol	8.78	41.77
KRH14698	Soybean	cytosol	8.78	41.77
KRH19643	Soybean	cytosol	12.77	41.74
KRG95774	Soybean	cytosol, nucleus	42.02	41.69
KRH67486	Soybean	nucleus	42.02	41.69
KRH64058	Soybean	cytosol, endoplasmic reticulum	42.02	41.47
KRH08072	Soybean	cytosol	35.64	41.36
KRH32257	Soybean	cytosol	41.49	41.05
KRH00223	Soybean	cytosol, nucleus	42.29	40.05
KRH15944	Soybean	endoplasmic reticulum	40.43	40.0
KRH64550	Soybean	endoplasmic reticulum	40.16	39.74
KRH53384	Soybean	cytosol, endoplasmic reticulum, mitochondrion	40.16	39.63
KRH18052	Soybean	cytosol	39.89	39.58
KRH16454	Soybean	cytosol	38.3	38.81
KRH38840	Soybean	cytosol	38.03	38.24
KRH75885	Soybean	cytosol	40.16	37.94
KRH49366	Soybean	cytosol, nucleus	40.16	37.75
KRH14696	Soybean	cytosol	12.77	36.36
KRH75889	Soybean	cytosol	38.3	36.0
KRH65753	Soybean	cytosol	17.29	33.33
KRH62448	Soybean	cytosol, vacuole	13.03	32.24
KRH75888	Soybean	cytosol	11.44	31.39
KRH75887	Soybean	cytosol	15.69	30.1
KRH65755	Soybean	cytosol	17.82	30.04
KRG88472	Soybean	cytosol	11.97	30.0
KRH65756	Soybean	cytosol	13.03	28.32
KRH59676	Soybean	mitochondrion	27.66	24.41
KRH41009	Soybean	mitochondrion, plastid	27.66	24.36
KRH09146	Soybean	cytosol, nucleus	20.74	21.43
KRH38627	Soybean	cytosol	19.95	16.27

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	EMBL:ACUP02007165	InterPro:ADH_C	InterPro:ADH_N
InterPro:ADH_Zn_CS	EnsemblPlantsGene:GLYMA_12G015300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf
UniProt:I1LP48	EnsemblPlants:KRH23995	ProteinID:KRH23995	ProteinID:KRH23995.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107
PFAM:PF08240	InterPro:PKS_ER	ScanProsite:PS00059	PANTHER:PTHR43880	PANTHER:PTHR43880:SF19	SMART:SM00829
SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI000233CD30	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:1100879..1104057

Molecular Weight (calculated)

40032.5 Da

IEP (calculated)

6.392

GRAVY (calculated)

0.075

Length

376 amino acids

Sequence
(BLAST)

001: MPNTSQVISC KAAICWGAGK PVTVEEIQVD PPKATEVRVK MLCASLCHTD ISSIQGFPYI NFPLALGHEG VGVVESVGDQ VRNLKEGDVV IPTYIGECQE
101: CENCVSGKTN LCLTYPIRLT GLLPDNTSRM SIRGQRLHHV LSCATWSEYM VSDANYTLKV DPTIDPAHAS FISCGFSTGY GAAWKEAKVE SGSSVAVFGL
201: GAVGLGAISG AKMLGATKII GIDKNEMKRE KGEAFGMTDF IKAGDSAKSV SELVKEMSGG MGVDYSFECS GVAPLLTESV EATKVGTGKT IAIGTGTEPI
301: IPFGLTSIMY GRTLKGSVFG GLKAISDLSI VANKCQKEEF PLQELFTHEV PLTDINKAFE LLKKPNCVKV VIKMSH

Best Arabidopsis Sequence Match ( AT1G22430.1 )
(BLAST)

001: MDKTFFSSNE GKPITCKAAI CRKAGEALVI EDIHVDPPQA YEVRIKILCT SLCHTDLTFW KLSFGPISRF PRILGHEAVG VVESIGENVD GFKQGDVVLP
101: VFHPYCEECK DCKSSKTNWC DRYAEDFISN TRRYGMASRF KDSSGEVIHH FLFVSSFSEY TVVDIAHLVK ISPEIPVDKA ALLSCGVSTG IGAAWKVANV
201: EEGSTIAIFG LGAVGLAVAE GARLRGAAKI IGIDTNSDKF ELGKKFGFTD FINPTLCGEK KISEVIKEMT EGGVDYSFEC VGLASLLNEA FISTRTGTGK
301: TVMLGMEKHA APISLGSFDL LRGRVICGSL FGGLKSKLDI PILVDHYLKK ELNLDSFITH ELNFKEINKA FALLEEGKSL RCILWMDK

Arabidopsis Description

Alcohol dehydrogenase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK86]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.