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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 5
  • plastid 1
  • mitochondrion 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:cytosol
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 27291164
nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG95774 Soybean cytosol, nucleus 99.47 99.47
GSMUA_Achr1P05790_001 Banana cytosol, plasma membrane 89.97 89.97
VIT_07s0005g04600.t01 Wine grape cytosol 55.94 89.83
PGSC0003DMT400019942 Potato cytosol 89.71 89.71
Os02t0815500-01 Rice plasma membrane, plastid 89.71 89.24
CDY22323 Canola cytosol 88.92 88.92
Bra033706.1-P Field mustard cytosol 88.92 88.92
KRH32257 Soybean cytosol 88.92 88.68
CDY13136 Canola cytosol 88.65 88.65
CDX94738 Canola cytosol 88.65 88.65
CDY36960 Canola cytosol 88.39 88.39
EES06008 Sorghum cytosol 88.13 87.66
TraesCS6D01G371200.1 Wheat golgi 86.81 86.35
TraesCS6B01G425700.1 Wheat cytosol 86.54 86.09
TraesCS6A01G386600.1 Wheat cytosol 86.54 86.09
AT5G43940.2 Thale cress cytosol 88.13 85.42
VIT_07s0005g04610.t01 Wine grape cytosol 27.18 85.12
Solyc09g064370.2.1 Tomato nucleus 85.75 85.08
Bra027516.1-P Field mustard extracellular 88.13 82.27
KRH19643 Soybean cytosol 24.54 80.87
HORVU6Hr1G090260.1 Barley cytosol 87.07 65.74
KRH64058 Soybean cytosol, endoplasmic reticulum 57.78 57.48
Zm00001d018468_P001 Maize plastid 78.89 57.39
KRH15944 Soybean endoplasmic reticulum 56.99 56.84
KRH64550 Soybean endoplasmic reticulum 55.41 55.26
KRH53384 Soybean cytosol, endoplasmic reticulum, mitochondrion 55.41 55.12
KRH18052 Soybean cytosol 54.09 54.09
KRH16454 Soybean cytosol 52.77 53.91
KRH08072 Soybean cytosol 44.59 52.16
KRH38840 Soybean cytosol 50.4 51.07
KRH00223 Soybean cytosol, nucleus 52.77 50.38
KRH49366 Soybean cytosol, nucleus 53.03 50.25
KRH73443 Soybean cytosol 49.87 48.96
KRH75885 Soybean cytosol 50.92 48.49
KRG89834 Soybean cytosol 50.13 48.47
KRH75889 Soybean cytosol 49.87 47.25
KRH65755 Soybean cytosol 27.7 47.09
KRH62448 Soybean cytosol, vacuole 18.73 46.71
KRH14690 Soybean cytosol 47.23 46.25
KRH73446 Soybean cytosol 46.44 45.48
KRH23996 Soybean cytosol 43.54 44.0
KRH23989 Soybean cytosol 43.54 44.0
KRH65756 Soybean cytosol 20.05 43.93
KRH23997 Soybean cytosol 41.69 43.65
KRH65753 Soybean cytosol 22.16 43.08
KRH23995 Soybean nucleus 41.69 42.02
KRH75888 Soybean cytosol 15.04 41.61
KRH14696 Soybean cytosol 13.98 40.15
KRH14698 Soybean cytosol 8.18 39.24
KRH14692 Soybean cytosol 8.18 39.24
KRG88472 Soybean cytosol 14.78 37.33
KRH75887 Soybean cytosol 18.47 35.71
KRH23988 Soybean endoplasmic reticulum, extracellular 8.44 35.56
KRH41009 Soybean mitochondrion, plastid 30.08 26.7
KRH59676 Soybean mitochondrion 29.55 26.29
KRH09146 Soybean cytosol, nucleus 24.01 25.0
KRH38627 Soybean cytosol 23.75 19.52
Protein Annotations
KEGG:00010+1.1.1.1KEGG:00071+1.1.1.1KEGG:00260+1.1.1.1KEGG:00350+1.1.1.1KEGG:00592+1.1.1.1KEGG:00625+1.1.1.1
KEGG:00626+1.1.1.1KEGG:00680+1.1.1.284KEGG:00830+1.1.1.1KEGG:00980+1.1.1.1KEGG:00982+1.1.1.1EntrezGene:100499743
MapMan:18.7.1Gene3D:3.40.50.720Gene3D:3.90.180.10EMBL:ACUP02002060InterPro:ADH_3InterPro:ADH_C
InterPro:ADH_NInterPro:ADH_Zn_CSEnsemblPlantsGene:GLYMA_03G168700GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0006069GO:GO:0006091GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009987
GO:GO:0016491GO:GO:0046872GO:GO:0051903GO:GO:0055114InterPro:GroES-like_sfUniProt:I1JP95
EnsemblPlants:KRH67486ProteinID:KRH67486ProteinID:KRH67486.1InterPro:NAD(P)-bd_dom_sfPFAM:PF00107PFAM:PF08240
ScanProsite:PS00059PANTHER:PTHR43880MetaCyc:PWY-1801MetaCyc:PWY-3162MetaCyc:PWY-5057MetaCyc:PWY-5076
MetaCyc:PWY-5078MetaCyc:PWY-5079MetaCyc:PWY-5082MetaCyc:PWY-5480MetaCyc:PWY-5486MetaCyc:PWY-5751
MetaCyc:PWY-6313MetaCyc:PWY-6333MetaCyc:PWY-6342MetaCyc:PWY-6454MetaCyc:PWY-6587MetaCyc:PWY-6802
MetaCyc:PWY-6871MetaCyc:PWY-6901MetaCyc:PWY-7013MetaCyc:PWY-7111MetaCyc:PWY-7118MetaCyc:PWY-7396
MetaCyc:PWY-7798SUPFAM:SSF50129SUPFAM:SSF51735TIGRFAMs:TIGR02818UniParc:UPI000233A796:
Description
hypothetical protein
Coordinates
chr3:-:38304037..38307268
Molecular Weight (calculated)
40342.5 Da
IEP (calculated)
6.755
GRAVY (calculated)
0.055
Length
379 amino acids
Sequence
(BLAST)
001: MATQGQVITC KAAVAWEPNK PLTVQDVQVA PPQAGEVRVQ ILFTALCHTD AYTWGGKDPE GLFPCILGHE AAGIVESVGE GVTNVQPGDH VIPCYQAECG
101: ECKTCKSGKT NLCGKVRSAT GVGVMLNDGK SRFSINGKPI YHFMGTSTFS QYTVVHDVSV AKIDPVAPLE KVCLLGCGVS TGLGAVWNTA KVESGSIVAI
201: FGLGTVGLAV AEGAKTAGAS RVIGIDIDSK KFDIAKNFGV TEFINPNEHD KPIQQVIIDR TDGGVDYSFE CIGNVSVMRA ALECCHKGWG TSVIVGVAAS
301: GQEISTRPFQ LVSGRVWKGT AFGGFKSRSQ VPWLVDKYLK KEIKVDEYIT HTLTLSEINK AFDLLHEGGC LRCVLSTQE
Best Arabidopsis Sequence Match ( AT5G43940.1 )
(BLAST)
001: MATQGQVITC KAAVAYEPNK PLVIEDVQVA PPQAGEVRIK ILYTALCHTD AYTWSGKDPE GLFPCILGHE AAGIVESVGE GVTEVQAGDH VIPCYQAECR
101: ECKFCKSGKT NLCGKVRSAT GVGIMMNDRK SRFSVNGKPI YHFMGTSTFS QYTVVHDVSV AKIDPTAPLD KVCLLGCGVP TGLGAVWNTA KVEPGSNVAI
201: FGLGTVGLAV AEGAKTAGAS RIIGIDIDSK KYETAKKFGV NEFVNPKDHD KPIQEVIVDL TDGGVDYSFE CIGNVSVMRA ALECCHKGWG TSVIVGVAAS
301: GQEISTRPFQ LVTGRVWKGT AFGGFKSRTQ VPWLVEKYMN KEIKVDEYIT HNLTLGEINK AFDLLHEGTC LRCVLDTSK
Arabidopsis Description
HOT5S-(hydroxymethyl)glutathione dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K7D6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.