Factsheet for Solyc09g064370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019942	Potato	cytosol	94.5	95.25
VIT_07s0005g04600.t01	Wine grape	cytosol	56.28	91.1
KRH32257	Soybean	cytosol	86.39	86.84
GSMUA_Achr1P05790_001	Banana	cytosol, plasma membrane	86.13	86.81
Os02t0815500-01	Rice	plasma membrane, plastid	86.39	86.61
Bra033706.1-P	Field mustard	cytosol	85.6	86.28
CDY22323	Canola	cytosol	85.6	86.28
EES06008	Sorghum	cytosol	85.86	86.09
CDY36960	Canola	cytosol	85.34	86.02
CDX94738	Canola	cytosol	85.08	85.75
CDY13136	Canola	cytosol	85.08	85.75
KRH67486	Soybean	nucleus	85.08	85.75
KRG95774	Soybean	cytosol, nucleus	84.82	85.49
TraesCS6B01G425700.1	Wheat	cytosol	84.03	84.25
TraesCS6D01G371200.1	Wheat	golgi	83.51	83.73
TraesCS6A01G386600.1	Wheat	cytosol	83.25	83.46
AT5G43940.2	Thale cress	cytosol	85.08	83.12
Bra027516.1-P	Field mustard	extracellular	84.56	79.56
VIT_07s0005g04610.t01	Wine grape	cytosol	24.61	77.69
KRH19643	Soybean	cytosol	22.77	75.65
HORVU6Hr1G090260.1	Barley	cytosol	83.77	63.74
Solyc06g059740.2.1	Tomato	plastid	56.54	56.25
Solyc04g064710.2.1	Tomato	cytosol, plastid	55.76	56.2
Zm00001d018468_P001	Maize	plastid	75.13	55.09
Solyc06g072160.2.1	Tomato	cytosol	50.0	48.48
Solyc08g083280.2.1	Tomato	cytosol	47.64	47.77
Solyc04g082170.2.1	Tomato	cytosol	47.64	46.79
Solyc04g082180.2.1	Tomato	cytosol	47.12	46.15
Solyc04g074540.2.1	Tomato	cytosol	44.76	44.53
Solyc12g094500.1.1	Tomato	cytosol	45.29	44.47
Solyc03g044200.2.1	Tomato	cytosol	41.1	41.64
Solyc04g074530.2.1	Tomato	cytosol, plastid	42.41	41.12
Solyc11g071290.1.1	Tomato	cytosol	39.27	39.89
Solyc06g035680.1.1	Tomato	cytosol	11.52	24.72
Solyc05g056540.2.1	Tomato	plastid	27.49	24.31
Solyc01g006510.2.1	Tomato	cytosol, extracellular, nucleus, plastid	21.99	23.66

Protein Annotations

KEGG:00010+1.1.1.1	KEGG:00071+1.1.1.1	KEGG:00260+1.1.1.1	KEGG:00350+1.1.1.1	KEGG:00592+1.1.1.1	KEGG:00625+1.1.1.1
KEGG:00626+1.1.1.1	KEGG:00680+1.1.1.284	KEGG:00830+1.1.1.1	KEGG:00980+1.1.1.1	KEGG:00982+1.1.1.1	MapMan:18.7.1
Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:ADH_3	InterPro:ADH_C	InterPro:ADH_N	GO:GO:0000003
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005829	GO:GO:0006069	GO:GO:0006091
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0008270
GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0010286	GO:GO:0016491	GO:GO:0046292
GO:GO:0046872	GO:GO:0048316	GO:GO:0051903	GO:GO:0055114	GO:GO:0080007	InterPro:GroES-like_sf
UniProt:K4CU67	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	PANTHER:PTHR43880	SUPFAM:SSF50129
SUPFAM:SSF51735	EnsemblPlantsGene:Solyc09g064370.2	EnsemblPlants:Solyc09g064370.2.1	TIGRFAMs:TIGR02818	UniParc:UPI000276C126	SEG:seg

Description

No Description!

Coordinates

chr9:+:61552580..61557226

Molecular Weight (calculated)

41290.2 Da

IEP (calculated)

8.120

GRAVY (calculated)

0.088

Length

382 amino acids

Sequence
(BLAST)

001: MATQGQVITC KAAVAWEPNK PLVIEDVQVA PPQAGEVRVK VLYTALCHTD AYTWSGKLKI LRVSSHVFLV MRLRGTIVES VGEGVTEVQP GDHVIPCYQA
101: ECRECKFCKS GKTNLCGKVR AATGVGVMMN DRKSRFSING KPIYHFMGTS TFSQYTVVHD VSVAKIDPVA PLEKVCLLGC GVPTGLGAVW NTAKVEPGSI
201: VAVFGLGTVG LAVAEGAKAA GASRIIGIDI DSKKFDRAKN FGVTEFINPK EHEQPIQQVI VDLTDGGVDY SFECIGNVSV MRSALECCHK GWGTSVIVGV
301: AASGQEISTR PFQLVTGRVW KGTAFGGFKS RSQVPSLVDK YLKKEIKVDE YITHNMTLAD INKAFDLMHD GDCLRVVLDM FV

Best Arabidopsis Sequence Match ( AT5G43940.1 )
(BLAST)

001: MATQGQVITC KAAVAYEPNK PLVIEDVQVA PPQAGEVRIK ILYTALCHTD AYTWSGKDPE GLFPCILGHE AAGIVESVGE GVTEVQAGDH VIPCYQAECR
101: ECKFCKSGKT NLCGKVRSAT GVGIMMNDRK SRFSVNGKPI YHFMGTSTFS QYTVVHDVSV AKIDPTAPLD KVCLLGCGVP TGLGAVWNTA KVEPGSNVAI
201: FGLGTVGLAV AEGAKTAGAS RIIGIDIDSK KYETAKKFGV NEFVNPKDHD KPIQEVIVDL TDGGVDYSFE CIGNVSVMRA ALECCHKGWG TSVIVGVAAS
301: GQEISTRPFQ LVTGRVWKGT AFGGFKSRTQ VPWLVEKYMN KEIKVDEYIT HNLTLGEINK AFDLLHEGTC LRCVLDTSK

Arabidopsis Description

HOT5S-(hydroxymethyl)glutathione dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K7D6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.