Factsheet for Solyc06g072160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g072160.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24760.1	Solyc06g072160.2.1	AT5G24760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g00320.t01	Wine grape	cytosol	74.37	77.31
KRH38840	Soybean	cytosol	72.84	76.74
KRH08072	Soybean	cytosol	61.93	75.31
Bra020469.1-P	Field mustard	cytosol	71.07	73.68
CDY05399	Canola	cytosol	70.81	73.42
CDY05455	Canola	cytosol	70.81	73.42
AT5G24760.1	Thale cress	cytosol	70.56	72.97
Os02t0637700-01	Rice	plastid	69.29	71.65
TraesCS6B01G263200.1	Wheat	cytosol	69.8	71.61
TraesCS6A01G234500.2	Wheat	cytosol	69.8	71.61
TraesCS6D01G217000.3	Wheat	cytosol	70.05	71.32
GSMUA_Achr4P25400_001	Banana	cytosol, endoplasmic reticulum	68.02	70.34
EES07202	Sorghum	cytosol	68.53	70.31
Zm00001d051227_P001	Maize	extracellular	68.02	69.79
KRH62448	Soybean	cytosol, vacuole	26.9	69.74
Solyc04g064710.2.1	Tomato	cytosol, plastid	50.25	52.24
Solyc06g059740.2.1	Tomato	plastid	49.24	50.52
Solyc09g064370.2.1	Tomato	nucleus	48.48	50.0
Solyc12g094500.1.1	Tomato	cytosol	49.24	49.87
Solyc04g082170.2.1	Tomato	cytosol	47.46	48.07
Solyc04g082180.2.1	Tomato	cytosol	47.21	47.69
Solyc04g074540.2.1	Tomato	cytosol	46.45	47.66
Solyc08g083280.2.1	Tomato	cytosol	45.94	47.51
Solyc04g074530.2.1	Tomato	cytosol, plastid	42.89	42.89
Solyc03g044200.2.1	Tomato	cytosol	39.85	41.64
Solyc11g071290.1.1	Tomato	cytosol	38.07	39.89
Solyc06g035680.1.1	Tomato	cytosol	12.18	26.97
Solyc05g056540.2.1	Tomato	plastid	26.65	24.31
Solyc01g006510.2.1	Tomato	cytosol, extracellular, nucleus, plastid	21.83	24.23

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:K4C8T7	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00107	PFAM:PF08240	ScanProsite:PS00059	PANTHER:PTHR43880	PANTHER:PTHR43880:SF5	SUPFAM:SSF50129
SUPFAM:SSF51735	EnsemblPlantsGene:Solyc06g072160.2	EnsemblPlants:Solyc06g072160.2.1	UniParc:UPI0002765780	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:44479013..44484001

Molecular Weight (calculated)

42187.0 Da

IEP (calculated)

6.046

GRAVY (calculated)

0.060

Length

394 amino acids

Sequence
(BLAST)

001: MSLTDSVQNK QLGVITCKAA VAWGPGEPMV IEEVELSPPQ SMEIRVKVVC TSLCRSDVTA WLSQAQASIY PRIFGHEASG IVESVGEGVT EFVEGDHVLT
101: LFTGECRSCR HCTSGKSNIC QILGLKRDGV MHGDQKTRFS IKGKPVYHYC AVSSFSEYTI VHSGCAVKVS PIAPLDKICL LSCGAAAGLG AAWKVANVSE
201: GSKVVIFGLG TVGLSVAQGA KMRGASQIIG VDMRQEKCEK AKSFGVTDFL NPNDSDEPIP QVINRLTGGG ADYAFECIGD TGMVTTALQS CCDGWGLTVT
301: LGVPKQKPEV TAHFGLLLNG RTLTGSLFGG WKPKSEIPSL VEMYLKKEIE LDDLITHNLP FEDINTAFDL MKNGTCLRCV IHMPEIEGFP MAGN

Best Arabidopsis Sequence Match ( AT5G24760.1 )
(BLAST)

001: MSASSSSFEQ PQVITCNAAV AWRAGEPLVM EEVEVSPPQP LEIRIKVVCT SLCRSDLSAW ESQSLLPRIF GHEAAGIVES IGEGVTEFEK GDHVLAVFTG
101: ECGSCRHCIS GKSNMCQVLG MERKGLMHSD QKTRFSIKGK PVYHYCAVSS FSEYTVVHSG CAVKVDPLAP LHKICLLSCG VAAGLGAAWN VADVQKGSSV
201: VIFGLGTVGL SVAQGAKLRG AAQILGVDIN PAKAEQAKTF GVTDFINSND LSEPIPQVIK RMTGGGADFS FECVGDTGIA TTALQSCSDG WGMTVTLGVP
301: KAKPEVSAHY GLFLSGKSLK GTLFGGWKPK SDLPSLIDKY MNKEIMIDEF ITHNLSFDEI NKAFVLMREG KCLRCVLHMP K

Arabidopsis Description

Alcohol dehydrogenase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.