Factsheet for Bra020469.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra020469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24760.1	Bra020469.1-P	AT5G24760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05455	Canola	cytosol	98.68	98.68
AT5G24760.1	Thale cress	cytosol	92.89	92.65
KRH38840	Soybean	cytosol	77.63	78.88
KRH08072	Soybean	cytosol	65.26	76.54
VIT_16s0039g00320.t01	Wine grape	cytosol	74.74	74.93
Os02t0637700-01	Rice	plastid	72.89	72.7
TraesCS6A01G234500.2	Wheat	cytosol	73.16	72.4
TraesCS6B01G263200.1	Wheat	cytosol	72.89	72.14
TraesCS6D01G217000.3	Wheat	cytosol	73.42	72.09
EES07202	Sorghum	cytosol	71.84	71.09
Solyc06g072160.2.1	Tomato	cytosol	73.68	71.07
GSMUA_Achr4P25400_001	Banana	cytosol, endoplasmic reticulum	71.05	70.87
Zm00001d051227_P001	Maize	extracellular	70.79	70.05
KRH62448	Soybean	cytosol, vacuole	27.63	69.08
Bra015693.1-P	Field mustard	cytosol	52.11	52.24
Bra003690.1-P	Field mustard	cytosol	51.84	51.98
Bra033706.1-P	Field mustard	cytosol	51.05	51.19
Bra025081.1-P	Field mustard	cytosol	49.47	48.33
Bra031390.1-P	Field mustard	cytosol	48.68	47.56
Bra031208.1-P	Field mustard	cytosol	47.37	47.12
Bra027516.1-P	Field mustard	extracellular	50.26	47.04
Bra010185.1-P	Field mustard	cytosol	30.79	46.25
Bra013586.1-P	Field mustard	cytosol	26.84	45.54
Bra023290.1-P	Field mustard	cytosol	46.32	44.67
Bra012327.1-P	Field mustard	cytosol	46.05	29.31
Bra029150.1-P	Field mustard	cytosol	3.68	24.56
Bra038649.1-P	Field mustard	mitochondrion	26.58	23.22
Bra028288.1-P	Field mustard	cytosol	21.05	23.12
Bra037749.1-P	Field mustard	cytosol	9.21	18.72

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS
EnsemblPlantsGene:Bra020469	EnsemblPlants:Bra020469.1	EnsemblPlants:Bra020469.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:GroES-like_sf	UniProt:M4DVC5	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	ScanProsite:PS00059
PANTHER:PTHR43880	PANTHER:PTHR43880:SF5	SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI0002547053	SEG:seg

Description

AT5G24760 (E=8e-201) | alcohol dehydrogenase, putative

Coordinates

chrA02:+:25193479..25195439

Molecular Weight (calculated)

40825.3 Da

IEP (calculated)

6.766

GRAVY (calculated)

0.074

Length

380 amino acids

Sequence
(BLAST)

001: MSSSSSYEQP QVITCKAAVA WRAGEPLVME EVEVSPPQPL EIRIKVVCTS LCRSDLSAWE SQSLLPRIFG HEAAGIVESI GEGVTEFEKG DHVLAVFTGE
101: CGSCRHCISG KSNMCQVLGM ERRGLMHSDQ KTRFFIKGKP VYHYCAVSSF SEYTVVHSGC AVKVHPLAPL HKICLLSCGA AAGLGAAWNV ADVQRGSSVV
201: IFGLGTVGLS VAQGAKLRGA AQIIGVDINS SKAEQAKIFG VTDFINSNDI SEPIHQVIKR MTGGGADFSF ECVGDTGVAT TALQSCSDGW GMTVTLGVPK
301: VKPEVSAHYG LFLSGKSLKG TLFGGWKPKS DLPSLIEKYM NKEIMLDELV THDLAFDDIN EAFELMREGK CLRCVLHMSK

Best Arabidopsis Sequence Match ( AT5G24760.1 )
(BLAST)

001: MSASSSSFEQ PQVITCNAAV AWRAGEPLVM EEVEVSPPQP LEIRIKVVCT SLCRSDLSAW ESQSLLPRIF GHEAAGIVES IGEGVTEFEK GDHVLAVFTG
101: ECGSCRHCIS GKSNMCQVLG MERKGLMHSD QKTRFSIKGK PVYHYCAVSS FSEYTVVHSG CAVKVDPLAP LHKICLLSCG VAAGLGAAWN VADVQKGSSV
201: VIFGLGTVGL SVAQGAKLRG AAQILGVDIN PAKAEQAKTF GVTDFINSND LSEPIPQVIK RMTGGGADFS FECVGDTGIA TTALQSCSDG WGMTVTLGVP
301: KAKPEVSAHY GLFLSGKSLK GTLFGGWKPK SDLPSLIDKY MNKEIMIDEF ITHNLSFDEI NKAFVLMREG KCLRCVLHMP K

Arabidopsis Description

Alcohol dehydrogenase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.