Factsheet for GSMUA_Achr4P25400_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P25400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24760.1	GSMUA_Achr4P25400_001	AT5G24760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0637700-01	Rice	plastid	78.22	78.22
EES07202	Sorghum	cytosol	78.22	77.6
Zm00001d051227_P001	Maize	extracellular	76.9	76.3
TraesCS6A01G234500.2	Wheat	cytosol	75.85	75.26
TraesCS6D01G217000.3	Wheat	cytosol	76.38	75.19
TraesCS6B01G263200.1	Wheat	cytosol	75.59	75.0
KRH38840	Soybean	cytosol	73.49	74.87
KRH08072	Soybean	cytosol	62.99	74.07
VIT_16s0039g00320.t01	Wine grape	cytosol	72.7	73.09
Bra020469.1-P	Field mustard	cytosol	70.87	71.05
CDY05455	Canola	cytosol	70.6	70.79
CDY05399	Canola	cytosol	70.34	70.53
AT5G24760.1	Thale cress	cytosol	70.34	70.34
KRH62448	Soybean	cytosol, vacuole	27.82	69.74
Solyc06g072160.2.1	Tomato	cytosol	70.34	68.02
GSMUA_Achr1P05790_001	Banana	cytosol, plasma membrane	52.49	52.77
GSMUA_Achr6P18590_001	Banana	cytosol	51.71	51.84
GSMUA_Achr9P08450_001	Banana	cytosol	51.71	51.84
GSMUA_Achr8P29470_001	Banana	cytosol	50.92	51.05
GSMUA_Achr2P08040_001	Banana	cytosol	50.92	51.05
GSMUA_Achr11P...	Banana	cytosol	51.44	49.62
GSMUA_Achr4P29520_001	Banana	cytosol	47.77	45.61
GSMUA_Achr5P25890_001	Banana	cytosol	29.4	30.11
GSMUA_Achr7P11730_001	Banana	plastid	45.41	27.42
GSMUA_Achr4P19640_001	Banana	cytosol	21.52	22.53
GSMUA_Achr4P19620_001	Banana	cytosol	10.24	21.91
GSMUA_Achr4P19630_001	Banana	cytosol	8.4	20.78
GSMUA_Achr7P11720_001	Banana	mitochondrion, nucleus, plastid	47.51	19.26

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr4G25400_001	EnsemblPlants:GSMUA_Achr4P25400_001	EnsemblPlants:GSMUA_Achr4T25400_001
InterPro:GroES-like_sf	UniProt:M0SS01	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	ScanProsite:PS00059
PANTHER:PTHR43880	PANTHER:PTHR43880:SF5	SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI00029688CD	SEG:seg

Description

Alcohol dehydrogenase-like 6 [Source:GMGC_GENE;Acc:GSMUA_Achr4G25400_001]

Coordinates

chr4:+:24932364..24937223

Molecular Weight (calculated)

41171.7 Da

IEP (calculated)

7.336

GRAVY (calculated)

-0.029

Length

381 amino acids

Sequence
(BLAST)

001: MSSSIKSAGV ITCKAAVAWG PEQPLVLEEV EVDPPKASEI RVKVACTSLC RSDLTQWQSQ AQPDLFPRIF GHEASGIVES VGEGVTEFKE GDHVLTVFIG
101: ECQSCKHCTS GKSNMCQKLG LERRGVMHSD QKTRFRVNGR PIYHYCAVSS FSEYTVVHSG CAVKISPSVR MDRACLLSCG VAAGIGAAWN VADISKGSTV
201: VIFGLGTVGL SVAQAAKSRG ASRIIGVDIN PEKYEKGKAF GVTEYINPDE CKEPIQQVIK QITDGGADYS FECVGDTSIV STALQSCCDG WGMTVTLGVP
301: KTNPVVSTHY AFLLMGRTLK GSLFGGWKPK SELPLLVDKY MKGEIQLDEL VTHDITFANI NEAFSLMREG KCLRCVIHMP K

Best Arabidopsis Sequence Match ( AT5G24760.1 )
(BLAST)

001: MSASSSSFEQ PQVITCNAAV AWRAGEPLVM EEVEVSPPQP LEIRIKVVCT SLCRSDLSAW ESQSLLPRIF GHEAAGIVES IGEGVTEFEK GDHVLAVFTG
101: ECGSCRHCIS GKSNMCQVLG MERKGLMHSD QKTRFSIKGK PVYHYCAVSS FSEYTVVHSG CAVKVDPLAP LHKICLLSCG VAAGLGAAWN VADVQKGSSV
201: VIFGLGTVGL SVAQGAKLRG AAQILGVDIN PAKAEQAKTF GVTDFINSND LSEPIPQVIK RMTGGGADFS FECVGDTGIA TTALQSCSDG WGMTVTLGVP
301: KAKPEVSAHY GLFLSGKSLK GTLFGGWKPK SDLPSLIDKY MNKEIMIDEF ITHNLSFDEI NKAFVLMREG KCLRCVLHMP K

Arabidopsis Description

Alcohol dehydrogenase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.