Factsheet for GSMUA_Achr1P05790_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033706.1-P	Field mustard	cytosol	93.4	93.4
CDY22323	Canola	cytosol	93.4	93.4
CDX94738	Canola	cytosol	92.88	92.88
CDY13136	Canola	cytosol	92.88	92.88
CDY36960	Canola	cytosol	92.61	92.61
VIT_07s0005g04610.t01	Wine grape	cytosol	29.55	92.56
Os02t0815500-01	Rice	plasma membrane, plastid	92.35	91.86
EES06008	Sorghum	cytosol	91.82	91.34
VIT_07s0005g04600.t01	Wine grape	cytosol	56.73	91.1
PGSC0003DMT400019942	Potato	cytosol	91.03	91.03
TraesCS6D01G371200.1	Wheat	golgi	90.5	90.03
TraesCS6B01G425700.1	Wheat	cytosol	90.5	90.03
TraesCS6A01G386600.1	Wheat	cytosol	90.5	90.03
KRH67486	Soybean	nucleus	89.97	89.97
KRG95774	Soybean	cytosol, nucleus	89.71	89.71
AT5G43940.2	Thale cress	cytosol	92.08	89.26
KRH32257	Soybean	cytosol	88.39	88.16
Bra027516.1-P	Field mustard	extracellular	92.35	86.21
Solyc09g064370.2.1	Tomato	nucleus	86.81	86.13
KRH19643	Soybean	cytosol	25.33	83.48
HORVU6Hr1G090260.1	Barley	cytosol	91.03	68.73
GSMUA_Achr6P18590_001	Banana	cytosol	59.1	58.95
GSMUA_Achr2P08040_001	Banana	cytosol	58.31	58.16
Zm00001d018468_P001	Maize	plastid	79.95	58.16
GSMUA_Achr9P08450_001	Banana	cytosol	56.99	56.84
GSMUA_Achr8P29470_001	Banana	cytosol	56.99	56.84
GSMUA_Achr11P...	Banana	cytosol	58.05	55.7
GSMUA_Achr4P25400_001	Banana	cytosol, endoplasmic reticulum	52.77	52.49
GSMUA_Achr4P29520_001	Banana	cytosol	52.24	49.62
GSMUA_Achr5P25890_001	Banana	cytosol	29.82	30.38
GSMUA_Achr7P11730_001	Banana	plastid	45.65	27.42
GSMUA_Achr4P19620_001	Banana	cytosol	12.14	25.84
GSMUA_Achr4P19640_001	Banana	cytosol	24.27	25.27
GSMUA_Achr4P19630_001	Banana	cytosol	9.23	22.73
GSMUA_Achr7P11720_001	Banana	mitochondrion, nucleus, plastid	46.7	18.83

Protein Annotations

KEGG:00010+1.1.1.1	KEGG:00071+1.1.1.1	KEGG:00260+1.1.1.1	KEGG:00350+1.1.1.1	KEGG:00592+1.1.1.1	KEGG:00625+1.1.1.1
KEGG:00626+1.1.1.1	KEGG:00680+1.1.1.284	KEGG:00830+1.1.1.1	KEGG:00980+1.1.1.1	KEGG:00982+1.1.1.1	MapMan:18.7.1
Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:ADH_3	InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS
GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005829	GO:GO:0006069	GO:GO:0006091
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0008270
GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0010286	GO:GO:0016491	GO:GO:0046292
GO:GO:0046872	GO:GO:0048316	GO:GO:0051903	GO:GO:0055114	GO:GO:0080007	EnsemblPlantsGene:GSMUA_Achr1G05790_001
EnsemblPlants:GSMUA_Achr1P05790_001	EnsemblPlants:GSMUA_Achr1T05790_001	InterPro:GroES-like_sf	UniProt:M0RXD7	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107
PFAM:PF08240	ScanProsite:PS00059	PANTHER:PTHR43880	SUPFAM:SSF50129	SUPFAM:SSF51735	TIGRFAMs:TIGR02818
UniParc:UPI000294FCD0	:	:	:	:	:

Description

Alcohol dehydrogenase class-3 [Source:GMGC_GENE;Acc:GSMUA_Achr1G05790_001]

Coordinates

chr1:+:4738704..4743373

Molecular Weight (calculated)

40721.3 Da

IEP (calculated)

7.389

GRAVY (calculated)

0.050

Length

379 amino acids

Sequence
(BLAST)

001: MATQGRVITC KAAVAWEANK PLVIEDVQVA PPQAGEVRIK ILFTALCHTD AYTWSGKDPE GLFPCILGHE AAGIVESVGE GVTEVQPGDH VIPCYQAECR
101: ECKFCKSGKT NLCGKVRLAT GVGVMLNDRK SRFSVNGKPI YHFMGTSTFS QYTVVHDVSV AKIHPQAPLE KVCLLGCGVP TGLGAVWNTA KVEAGSNVAI
201: FGLGTVGLAV AEGAKTAGAS RIIGVDIDSK KFDIAKKFGV NEFVNPKDHD KPIQQVIVDL TDGGVDYSFE CIGNVSVMRA ALECCHKGWG TSVIVGVAAS
301: GQEISTRPFQ LVTGRVWKGT AFGGFKSRSQ VPWLVDKYMN KEIKVDEYIT HTMTLEDINK AFDLMHEGGC LRCVLALQP

Best Arabidopsis Sequence Match ( AT5G43940.1 )
(BLAST)

001: MATQGQVITC KAAVAYEPNK PLVIEDVQVA PPQAGEVRIK ILYTALCHTD AYTWSGKDPE GLFPCILGHE AAGIVESVGE GVTEVQAGDH VIPCYQAECR
101: ECKFCKSGKT NLCGKVRSAT GVGIMMNDRK SRFSVNGKPI YHFMGTSTFS QYTVVHDVSV AKIDPTAPLD KVCLLGCGVP TGLGAVWNTA KVEPGSNVAI
201: FGLGTVGLAV AEGAKTAGAS RIIGIDIDSK KYETAKKFGV NEFVNPKDHD KPIQEVIVDL TDGGVDYSFE CIGNVSVMRA ALECCHKGWG TSVIVGVAAS
301: GQEISTRPFQ LVTGRVWKGT AFGGFKSRTQ VPWLVEKYMN KEIKVDEYIT HNLTLGEINK AFDLLHEGTC LRCVLDTSK

Arabidopsis Description

HOT5S-(hydroxymethyl)glutathione dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K7D6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.