Factsheet for Zm00001d018468_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g04600.t01	Wine grape	cytosol	41.07	90.68
EES06008	Sorghum	cytosol	62.38	85.3
TraesCS6A01G386600.1	Wheat	cytosol	59.5	81.36
TraesCS6D01G371200.1	Wheat	golgi	59.31	81.1
TraesCS6B01G425700.1	Wheat	cytosol	58.93	80.58
Os02t0815500-01	Rice	plasma membrane, plastid	58.54	80.05
GSMUA_Achr1P05790_001	Banana	cytosol, plasma membrane	58.16	79.95
KRG95774	Soybean	cytosol, nucleus	57.58	79.16
PGSC0003DMT400019942	Potato	cytosol	57.58	79.16
KRH67486	Soybean	nucleus	57.39	78.89
CDY22323	Canola	cytosol	57.2	78.63
CDX94738	Canola	cytosol	57.2	78.63
Bra033706.1-P	Field mustard	cytosol	57.2	78.63
CDY13136	Canola	cytosol	56.62	77.84
CDY36960	Canola	cytosol	56.43	77.57
KRH32257	Soybean	cytosol	56.43	77.37
AT5G43940.2	Thale cress	cytosol	57.2	76.21
Solyc09g064370.2.1	Tomato	nucleus	55.09	75.13
Bra027516.1-P	Field mustard	extracellular	56.81	72.91
HORVU6Hr1G090260.1	Barley	cytosol	62.57	64.94
KRH19643	Soybean	cytosol	12.28	55.65
VIT_07s0005g04610.t01	Wine grape	cytosol	12.67	54.55
Zm00001d033931_P002	Maize	cytosol, extracellular, plasma membrane	37.24	51.19
Zm00001d049059_P001	Maize	cytosol, extracellular	35.51	48.81
Zm00001d051227_P001	Maize	extracellular	33.01	44.79
Zm00001d030347_P001	Maize	vacuole	32.25	40.19
Zm00001d027995_P001	Maize	cytosol, extracellular	28.41	39.36
Zm00001d027996_P001	Maize	cytosol	28.98	37.01
Zm00001d030348_P001	Maize	cytosol	29.75	36.38
Zm00001d036209_P001	Maize	cytosol	14.97	27.18
Zm00001d035032_P003	Maize	mitochondrion	19.0	23.8
Zm00001d049716_P001	Maize	mitochondrion	18.62	23.26
Zm00001d031727_P004	Maize	cytosol, extracellular, plastid	14.97	21.31

Protein Annotations

KEGG:00010+1.1.1.1	KEGG:00071+1.1.1.1	KEGG:00260+1.1.1.1	KEGG:00350+1.1.1.1	KEGG:00592+1.1.1.1	KEGG:00625+1.1.1.1
KEGG:00626+1.1.1.1	KEGG:00680+1.1.1.284	KEGG:00830+1.1.1.1	KEGG:00980+1.1.1.1	KEGG:00982+1.1.1.1	MapMan:18.7.1
Gene3D:3.40.50.720	Gene3D:3.90.180.10	UniProt:A0A1D6HP90	InterPro:ADH_3	InterPro:ADH_C	InterPro:ADH_N
InterPro:ADH_Zn_CS	ProteinID:AQK76095.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0006069	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0051903	GO:GO:0055114	InterPro:GroES-like_sf
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	ScanProsite:PS00059	PANTHER:PTHR43880	SUPFAM:SSF50129
SUPFAM:SSF51735	SignalP:SignalP-noTM	TIGRFAMs:TIGR02818	UniParc:UPI000842BCE0	EnsemblPlantsGene:Zm00001d018468	EnsemblPlants:Zm00001d018468_P001
EnsemblPlants:Zm00001d018468_T001	SEG:seg	:	:	:	:

Description

formaldehyde dehydrogenase homolog1 formaldehyde dehydrogenase homolog1

Coordinates

chr5:+:221346595..221353674

Molecular Weight (calculated)

55571.0 Da

IEP (calculated)

7.195

GRAVY (calculated)

0.008

Length

521 amino acids

Sequence
(BLAST)

001: MATAVLRRPF LAALLLPAAG GASGTSSWFR PRRRRSSPSV RAVSSDSPKP VASTSSPTGG DSPDEEPPVL PLLQELADCL ILPPKLLAQL PSDLRLDLND
101: AAFDLSNGPV LDEIAETMIK NGKLLSKHPV VQSDVQAMKE KRRLKFGELE FGVTAQSATI GSAVAAIFGL ISWQLARGVQ SIPDNTTQYT NDNALQLAKD
201: PEGLFPCILG HEAAGIVESV GEGVTDVQPG DHVIPCYQAE CKECKFCKSG KTNLCGKVRS ATGVGVMMND MKSRFSVNGK PIYHFMGTST FSQYTVVHDV
301: SVAKINPQAP LDKVCLLGCG VPTGLGAVWN TAKVESGSVV AVFGLGTVGL AVAEGAKAAG ASRVIGIDID NKKFDVAKNF GVTEFVNPKE HDKPIQQVLV
401: DLTDGGVDYS FECIGNVSVM RAALECCHKG WGTSVIVGVA ASGQEIATRP FQLVTGRVWK GTAFGGFKSR TQVPWLVDKY MKKEIKVDEY ITHNMNLADI
501: NDAFHLLHEG GCLRCVLAMQ I

Best Arabidopsis Sequence Match ( AT5G43940.2 )
(BLAST)

001: MATQGQVITC KGTFILDPRT LTISAVAYEP NKPLVIEDVQ VAPPQAGEVR IKILYTALCH TDAYTWSGKD PEGLFPCILG HEAAGIVESV GEGVTEVQAG
101: DHVIPCYQAE CRECKFCKSG KTNLCGKVRS ATGVGIMMND RKSRFSVNGK PIYHFMGTST FSQYTVVHDV SVAKIDPTAP LDKVCLLGCG VPTGLGAVWN
201: TAKVEPGSNV AIFGLGTVGL AVAEGAKTAG ASRIIGIDID SKKYETAKKF GVNEFVNPKD HDKPIQEVIV DLTDGGVDYS FECIGNVSVM RAALECCHKG
301: WGTSVIVGVA ASGQEISTRP FQLVTGRVWK GTAFGGFKSR TQVPWLVEKY MNKEIKVDEY ITHNLTLGEI NKAFDLLHEG TCLRCVLDTS K

Arabidopsis Description

HOT5S-(hydroxymethyl)glutathione dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K7D6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.