CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67486	Soybean	nucleus	99.47	99.47
VIT_07s0005g04600.t01	Wine grape	cytosol	55.94	89.83
GSMUA_Achr1P05790_001	Banana	cytosol, plasma membrane	89.71	89.71
PGSC0003DMT400019942	Potato	cytosol	89.71	89.71
Os02t0815500-01	Rice	plasma membrane, plastid	89.97	89.5
KRH32257	Soybean	cytosol	89.18	88.95
Bra033706.1-P	Field mustard	cytosol	88.92	88.92
CDY13136	Canola	cytosol	88.92	88.92
CDY22323	Canola	cytosol	88.92	88.92
CDX94738	Canola	cytosol	88.65	88.65
CDY36960	Canola	cytosol	88.65	88.65
EES06008	Sorghum	cytosol	88.39	87.93
TraesCS6D01G371200.1	Wheat	golgi	87.07	86.61
TraesCS6B01G425700.1	Wheat	cytosol	86.81	86.35
TraesCS6A01G386600.1	Wheat	cytosol	86.81	86.35
AT5G43940.2	Thale cress	cytosol	88.13	85.42
VIT_07s0005g04610.t01	Wine grape	cytosol	27.18	85.12
Solyc09g064370.2.1	Tomato	nucleus	85.49	84.82
Bra027516.1-P	Field mustard	extracellular	88.39	82.51
KRH19643	Soybean	cytosol	24.54	80.87
HORVU6Hr1G090260.1	Barley	cytosol	87.34	65.94
Zm00001d018468_P001	Maize	plastid	79.16	57.58
KRH64058	Soybean	cytosol, endoplasmic reticulum	57.78	57.48
KRH15944	Soybean	endoplasmic reticulum	56.99	56.84
KRH64550	Soybean	endoplasmic reticulum	55.41	55.26
KRH53384	Soybean	cytosol, endoplasmic reticulum, mitochondrion	55.41	55.12
KRH18052	Soybean	cytosol	54.09	54.09
KRH16454	Soybean	cytosol	52.77	53.91
KRH08072	Soybean	cytosol	44.59	52.16
KRH38840	Soybean	cytosol	50.4	51.07
KRH00223	Soybean	cytosol, nucleus	52.77	50.38
KRH49366	Soybean	cytosol, nucleus	53.03	50.25
KRH73443	Soybean	cytosol	49.6	48.7
KRH75885	Soybean	cytosol	50.92	48.49
KRG89834	Soybean	cytosol	49.87	48.21
KRH75889	Soybean	cytosol	49.87	47.25
KRH65755	Soybean	cytosol	27.7	47.09
KRH62448	Soybean	cytosol, vacuole	18.73	46.71
KRH14690	Soybean	cytosol	47.23	46.25
KRH73446	Soybean	cytosol	46.17	45.22
KRH23989	Soybean	cytosol	43.54	44.0
KRH23996	Soybean	cytosol	43.54	44.0
KRH65756	Soybean	cytosol	20.05	43.93
KRH23997	Soybean	cytosol	41.69	43.65
KRH65753	Soybean	cytosol	22.16	43.08
KRH23995	Soybean	nucleus	41.69	42.02
KRH75888	Soybean	cytosol	15.04	41.61
KRH14696	Soybean	cytosol	13.98	40.15
KRH14692	Soybean	cytosol	8.18	39.24
KRH14698	Soybean	cytosol	8.18	39.24
KRG88472	Soybean	cytosol	14.78	37.33
KRH75887	Soybean	cytosol	18.47	35.71
KRH23988	Soybean	endoplasmic reticulum, extracellular	8.44	35.56
KRH41009	Soybean	mitochondrion, plastid	30.08	26.7
KRH59676	Soybean	mitochondrion	29.55	26.29
KRH09146	Soybean	cytosol, nucleus	24.27	25.27
KRH38627	Soybean	cytosol	24.01	19.74

Protein Annotations

KEGG:00010+1.1.1.1	KEGG:00071+1.1.1.1	KEGG:00260+1.1.1.1	KEGG:00350+1.1.1.1	KEGG:00592+1.1.1.1	KEGG:00625+1.1.1.1
KEGG:00626+1.1.1.1	KEGG:00680+1.1.1.284	KEGG:00830+1.1.1.1	KEGG:00980+1.1.1.1	KEGG:00982+1.1.1.1	MapMan:18.7.1
Gene3D:3.40.50.720	Gene3D:3.90.180.10	EMBL:ACUP02012136	InterPro:ADH_3	InterPro:ADH_C	InterPro:ADH_N
InterPro:ADH_Zn_CS	EnsemblPlantsGene:GLYMA_19G170100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006069
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016491
GO:GO:0046872	GO:GO:0051903	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:I1N9X0	EnsemblPlants:KRG95774
ProteinID:KRG95774	ProteinID:KRG95774.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	ScanProsite:PS00059
PANTHER:PTHR43880	MetaCyc:PWY-1801	MetaCyc:PWY-3162	MetaCyc:PWY-5057	MetaCyc:PWY-5076	MetaCyc:PWY-5078
MetaCyc:PWY-5079	MetaCyc:PWY-5082	MetaCyc:PWY-5480	MetaCyc:PWY-5486	MetaCyc:PWY-5751	MetaCyc:PWY-6313
MetaCyc:PWY-6333	MetaCyc:PWY-6342	MetaCyc:PWY-6454	MetaCyc:PWY-6587	MetaCyc:PWY-6802	MetaCyc:PWY-6871
MetaCyc:PWY-6901	MetaCyc:PWY-7013	MetaCyc:PWY-7111	MetaCyc:PWY-7118	MetaCyc:PWY-7396	MetaCyc:PWY-7798
SUPFAM:SSF50129	SUPFAM:SSF51735	TIGRFAMs:TIGR02818	UniParc:UPI000233F01D	:	:

Description

hypothetical protein

Coordinates

chr19:-:43081259..43084495

Molecular Weight (calculated)

40357.5 Da

IEP (calculated)

6.942

GRAVY (calculated)

0.032

Length

379 amino acids

Sequence
(BLAST)

001: MATQGQVITC KAAVAWEPNK PLTVQDVQVA PPQAGEVRVQ ILFTALCHTD AYTWGGKDPE GLFPCILGHE AAGIVESVGE GVTNVQPGDH VIPCYQAECG
101: ECKTCKSGKT NLCGKVRSAT GVGVMLNDGK SRFSINGKPI YHFMGTSTFS QYTVVHDVSV AKIDPKAPLE KVCLLGCGVS TGLGAVWNTA KVESGSIVAI
201: FGLGTVGLAV AEGAKTAGAS RVIGIDIDSK KFDVAKNFGV TEFINPNEHD KPIQQVIIDR TDGGVDYSFE CIGNVSVMRA ALECCHKGWG TSVIVGVAAS
301: GQEISTRPFQ LVSGRVWKGT AFGGFKSRSQ VPWLVDKYLK KEIKVDEYIT HTLTLSEINK AFDLLHEGGC LRCVLSTQE

Best Arabidopsis Sequence Match ( AT5G43940.1 )
(BLAST)

001: MATQGQVITC KAAVAYEPNK PLVIEDVQVA PPQAGEVRIK ILYTALCHTD AYTWSGKDPE GLFPCILGHE AAGIVESVGE GVTEVQAGDH VIPCYQAECR
101: ECKFCKSGKT NLCGKVRSAT GVGIMMNDRK SRFSVNGKPI YHFMGTSTFS QYTVVHDVSV AKIDPTAPLD KVCLLGCGVP TGLGAVWNTA KVEPGSNVAI
201: FGLGTVGLAV AEGAKTAGAS RIIGIDIDSK KYETAKKFGV NEFVNPKDHD KPIQEVIVDL TDGGVDYSFE CIGNVSVMRA ALECCHKGWG TSVIVGVAAS
301: GQEISTRPFQ LVTGRVWKGT AFGGFKSRTQ VPWLVEKYMN KEIKVDEYIT HNLTLGEINK AFDLLHEGTC LRCVLDTSK

Arabidopsis Description

HOT5S-(hydroxymethyl)glutathione dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K7D6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.