CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64550	Soybean	endoplasmic reticulum	91.32	91.32
KRH53384	Soybean	cytosol, endoplasmic reticulum, mitochondrion	91.05	90.81
KRH64058	Soybean	cytosol, endoplasmic reticulum	83.42	83.2
Bra015693.1-P	Field mustard	cytosol	82.89	83.11
CDX87542	Canola	cytosol	82.89	83.11
CDX88342	Canola	cytosol	82.89	83.11
AT1G77120.1	Thale cress	cytosol	81.84	82.06
Solyc04g064710.2.1	Tomato	cytosol, plastid	81.05	81.27
PGSC0003DMT400063937	Potato	cytosol	80.53	80.74
KRH18052	Soybean	cytosol	80.0	80.21
KRH16454	Soybean	cytosol	77.63	79.51
CDX68065	Canola	cytosol	77.63	77.84
Bra003690.1-P	Field mustard	cytosol	77.37	77.57
CDX79188	Canola	cytosol	77.37	77.57
GSMUA_Achr11P...	Banana	cytosol	80.26	77.22
VIT_18s0001g15450.t01	Wine grape	mitochondrion	80.0	71.19
KRH32257	Soybean	cytosol	58.16	58.16
KRH67486	Soybean	nucleus	56.84	56.99
KRG95774	Soybean	cytosol, nucleus	56.84	56.99
KRH19643	Soybean	cytosol	16.58	54.78
KRH08072	Soybean	cytosol	45.0	52.78
KRH38840	Soybean	cytosol	50.0	50.8
KRH65755	Soybean	cytosol	28.16	47.98
KRH62448	Soybean	cytosol, vacuole	18.95	47.37
KRH00223	Soybean	cytosol, nucleus	49.47	47.36
KRH75885	Soybean	cytosol	49.47	47.24
KRH14698	Soybean	cytosol	9.74	46.84
KRH14692	Soybean	cytosol	9.74	46.84
KRH49366	Soybean	cytosol, nucleus	48.95	46.5
KRH75889	Soybean	cytosol	48.68	46.25
KRH73443	Soybean	cytosol	46.58	45.85
KRH14690	Soybean	cytosol	46.32	45.48
KRG89834	Soybean	cytosol	46.84	45.41
KRH73446	Soybean	cytosol	45.79	44.96
KRH65756	Soybean	cytosol	19.74	43.35
KRH23995	Soybean	nucleus	40.0	40.43
KRH65753	Soybean	cytosol	20.53	40.0
KRH75887	Soybean	cytosol	20.53	39.8
KRH23997	Soybean	cytosol	37.89	39.78
KRH23996	Soybean	cytosol	39.21	39.73
KRH23989	Soybean	cytosol	39.21	39.73
KRH14696	Soybean	cytosol	13.68	39.39
KRH75888	Soybean	cytosol	13.42	37.23
KRG88472	Soybean	cytosol	14.21	36.0
KRH23988	Soybean	endoplasmic reticulum, extracellular	7.63	32.22
KRH59676	Soybean	mitochondrion	30.53	27.23
KRH41009	Soybean	mitochondrion, plastid	30.53	27.17
KRH09146	Soybean	cytosol, nucleus	23.68	24.73
KRH38627	Soybean	cytosol	23.95	19.74

Protein Annotations

EntrezGene:100800668	MapMan:3.11.1.2	Gene3D:3.40.50.720	Gene3D:3.90.180.10	EMBL:ACUP02008734	InterPro:ADH_C
InterPro:ADH_N	InterPro:ADH_Zn_CS	ncoils:Coil	EnsemblPlantsGene:GLYMA_14G121200	GO:GO:0003674	GO:GO:0003824
GO:GO:0004022	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491
GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:I1MAE6	EnsemblPlants:KRH15944	ProteinID:KRH15944
ProteinID:KRH15944.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER	ScanProsite:PS00059
PANTHER:PTHR43880	PANTHER:PTHR43880:SF9	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI000233ACB1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:17460374..17463978

Molecular Weight (calculated)

40835.1 Da

IEP (calculated)

6.501

GRAVY (calculated)

-0.003

Length

380 amino acids

Sequence
(BLAST)

001: MSSTVGQTIK CKAAIAWEAG KPLVIEEVEV APPQAGEVRL KILYTSLCHT DVYFWDAKGQ TPLFPRIFGH EASGIVESVG EGVTHLKPGD HALPVFTGEC
101: GDCAHCKSEE SNMCELLRIN TDRGVMIHDG QSRFSKNGQP IHHFLGTSTF SEYTVVHAGC VAKINPAAPL DKVCVLSCGI CTGFGATVNV AKPKPGSSVA
201: IFGLGAVGLA AAEGARVSGA SRIIGVDLVS ARFEEAKKFG VNEFVNPKDH DKPVQQVIAE MTNGGVDRAV ECTGSIQAMV SAFECVHDGW GLAVLVGVPS
301: KDDAFKTAPI NFLNERTLKG TFYGNYKPRT DLPSVVEKYM SGELEVDKFI THTVPFSEIN KAFDLMLKGQ SIRCIIRMQE

Best Arabidopsis Sequence Match ( AT1G77120.1 )
(BLAST)

001: MSTTGQIIRC KAAVAWEAGK PLVIEEVEVA PPQKHEVRIK ILFTSLCHTD VYFWEAKGQT PLFPRIFGHE AGGIVESVGE GVTDLQPGDH VLPIFTGECG
101: ECRHCHSEES NMCDLLRINT ERGGMIHDGE SRFSINGKPI YHFLGTSTFS EYTVVHSGQV AKINPDAPLD KVCIVSCGLS TGLGATLNVA KPKKGQSVAI
201: FGLGAVGLGA AEGARIAGAS RIIGVDFNSK RFDQAKEFGV TECVNPKDHD KPIQQVIAEM TDGGVDRSVE CTGSVQAMIQ AFECVHDGWG VAVLVGVPSK
301: DDAFKTHPMN FLNERTLKGT FFGNYKPKTD IPGVVEKYMN KELELEKFIT HTVPFSEINK AFDYMLKGES IRCIITMGA

Arabidopsis Description

ADH1Alcohol dehydrogenase class-P [Source:UniProtKB/Swiss-Prot;Acc:P06525]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.