Factsheet for Solyc04g064710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063937	Potato	cytosol	98.42	98.42
Bra015693.1-P	Field mustard	cytosol	85.22	85.22
CDX87542	Canola	cytosol	85.22	85.22
CDX88342	Canola	cytosol	85.22	85.22
AT1G77120.1	Thale cress	cytosol	84.7	84.7
KRH64550	Soybean	endoplasmic reticulum	84.7	84.47
KRH53384	Soybean	cytosol, endoplasmic reticulum, mitochondrion	84.17	83.73
KRH15944	Soybean	endoplasmic reticulum	81.27	81.05
Solyc06g059740.2.1	Tomato	plastid	81.79	80.73
GSMUA_Achr11P...	Banana	cytosol	83.91	80.51
CDX68065	Canola	cytosol	79.68	79.68
Bra003690.1-P	Field mustard	cytosol	79.42	79.42
CDX79188	Canola	cytosol	79.42	79.42
KRH18052	Soybean	cytosol	75.2	75.2
KRH16454	Soybean	cytosol	73.35	74.93
VIT_18s0001g15450.t01	Wine grape	mitochondrion	83.38	74.0
Solyc09g064370.2.1	Tomato	nucleus	56.2	55.76
Solyc04g082180.2.1	Tomato	cytosol	52.51	51.03
Solyc08g083280.2.1	Tomato	cytosol	51.19	50.92
Solyc04g082170.2.1	Tomato	cytosol	51.72	50.39
Solyc06g072160.2.1	Tomato	cytosol	52.24	50.25
Solyc12g094500.1.1	Tomato	cytosol	50.92	49.61
Solyc04g074540.2.1	Tomato	cytosol	48.28	47.66
Solyc04g074530.2.1	Tomato	cytosol, plastid	44.59	42.89
Solyc03g044200.2.1	Tomato	cytosol	42.48	42.71
Solyc11g071290.1.1	Tomato	cytosol	40.11	40.43
Solyc06g035680.1.1	Tomato	cytosol	12.14	25.84
Solyc01g006510.2.1	Tomato	cytosol, extracellular, nucleus, plastid	23.48	25.07
Solyc05g056540.2.1	Tomato	plastid	27.7	24.31

Protein Annotations

MapMan:3.11.1.2	Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS
GO:GO:0001666	GO:GO:0003674	GO:GO:0003824	GO:GO:0004022	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886
GO:GO:0006950	GO:GO:0006970	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009409
GO:GO:0009413	GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737
GO:GO:0009744	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0031000	GO:GO:0032355
GO:GO:0042542	GO:GO:0042803	GO:GO:0046686	GO:GO:0046872	GO:GO:0055114	GO:GO:1900039
InterPro:GroES-like_sf	UniProt:K4BT62	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	ScanProsite:PS00059
PANTHER:PTHR43880	PANTHER:PTHR43880:SF9	SUPFAM:SSF50129	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc04g064710.2	EnsemblPlants:Solyc04g064710.2.1
UniParc:UPI000276645F	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:55858388..55861421

Molecular Weight (calculated)

41153.6 Da

IEP (calculated)

6.878

GRAVY (calculated)

-0.097

Length

379 amino acids

Sequence
(BLAST)

001: MNTAGQVIRC KAAVAWEAGK PLVIEEVDVA PPQKHEVRLK ILFTSLCHTD VYFWEAKGQT PLFPRIFGHE AGGIVESVGE GVTDLQPGDH VLPVFTGECQ
101: QCRHCKSSES NMCELLRINT DRGVMISDGQ TRFSKDGKPI YHFVGTSTFS EYTVAHSGCV TKIDPQAPLD KVCVLSCGIS TGLGATLNVA KPTRGSYVAI
201: FGLGAVGLAA AEGARLAGAS RIIGIDLNPS RFNDAKKFGV TEFVNPKDHD KPVQEVIAEM TNGGVDRSVE CTGNVNAMIS AFECVHDGWG VAVLVGVPNK
301: DDAFKTHPMN LLNERTLKGT FFGNYKPKTD LPSVVAKYMN KELELEKFIT HQVPFSEINK AFDIMLKGEG LRCMITMGR

Best Arabidopsis Sequence Match ( AT1G77120.1 )
(BLAST)

001: MSTTGQIIRC KAAVAWEAGK PLVIEEVEVA PPQKHEVRIK ILFTSLCHTD VYFWEAKGQT PLFPRIFGHE AGGIVESVGE GVTDLQPGDH VLPIFTGECG
101: ECRHCHSEES NMCDLLRINT ERGGMIHDGE SRFSINGKPI YHFLGTSTFS EYTVVHSGQV AKINPDAPLD KVCIVSCGLS TGLGATLNVA KPKKGQSVAI
201: FGLGAVGLGA AEGARIAGAS RIIGVDFNSK RFDQAKEFGV TECVNPKDHD KPIQQVIAEM TDGGVDRSVE CTGSVQAMIQ AFECVHDGWG VAVLVGVPSK
301: DDAFKTHPMN FLNERTLKGT FFGNYKPKTD IPGVVEKYMN KELELEKFIT HTVPFSEINK AFDYMLKGES IRCIITMGA

Arabidopsis Description

ADH1Alcohol dehydrogenase class-P [Source:UniProtKB/Swiss-Prot;Acc:P06525]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.