Factsheet for Solyc01g006510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus, cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081907	Potato	cytosol	95.21	97.69
CDY00508	Canola	cytosol	84.51	86.71
Bra028288.1-P	Field mustard	cytosol	84.23	86.42
VIT_16s0100g00300.t01	Wine grape	cytosol	87.04	84.66
CDY58156	Canola	cytosol	85.92	83.79
AT5G51970.1	Thale cress	cytosol	85.92	83.79
KRH09146	Soybean	cytosol, nucleus	85.63	83.52
GSMUA_Achr4P19640_001	Banana	cytosol	85.35	83.24
GSMUA_Achr4P19630_001	Banana	cytosol	34.65	79.87
TraesCS7D01G269800.1	Wheat	cytosol	81.97	79.73
TraesCS7B01G167500.1	Wheat	cytosol	81.97	79.73
TraesCS7A01G269300.1	Wheat	cytosol	81.97	79.73
Os08t0545200-02	Rice	cytosol, plasma membrane, plastid	79.44	76.42
Zm00001d031727_P004	Maize	cytosol, extracellular, plastid	78.59	76.23
EES15252	Sorghum	cytosol	79.72	76.08
HORVU7Hr1G056770.2	Barley	cytosol	81.13	69.73
KRH38627	Soybean	cytosol	85.35	65.73
Solyc06g035680.1.1	Tomato	cytosol	31.55	62.92
Solyc11g071290.1.1	Tomato	cytosol	25.07	23.67
Solyc04g064710.2.1	Tomato	cytosol, plastid	25.07	23.48
Solyc05g056540.2.1	Tomato	plastid	28.45	23.38
Solyc12g094500.1.1	Tomato	cytosol	25.07	22.88
Solyc03g044200.2.1	Tomato	cytosol	24.23	22.81
Solyc04g082170.2.1	Tomato	cytosol	24.23	22.11
Solyc08g083280.2.1	Tomato	cytosol	23.66	22.05
Solyc09g064370.2.1	Tomato	nucleus	23.66	21.99
Solyc06g072160.2.1	Tomato	cytosol	24.23	21.83
Solyc06g059740.2.1	Tomato	plastid	23.38	21.61
Solyc04g082180.2.1	Tomato	cytosol	23.66	21.54
Solyc04g074540.2.1	Tomato	cytosol	22.25	20.57
Solyc04g074530.2.1	Tomato	cytosol, plastid	21.97	19.8

Protein Annotations

Gene3D:3.40.50.720	MapMan:3.5.2	Gene3D:3.90.180.10	EMBL:AB183015	InterPro:ADH_C	InterPro:ADH_N
InterPro:ADH_Zn_CS	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER	ScanProsite:PS00059	PANTHER:PTHR43161	PANTHER:PTHR43161:SF8
UniProt:Q3C2L6	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc01g006510.2	EnsemblPlants:Solyc01g006510.2.1
UniParc:UPI00005D603B	:	:	:	:	:

Description

Sorbitol related enzyme [Source:UniProtKB/TrEMBL;Acc:Q3C2L6]

Coordinates

chr1:+:1093865..1098227

Molecular Weight (calculated)

38128.6 Da

IEP (calculated)

6.237

GRAVY (calculated)

0.133

Length

355 amino acids

Sequence
(BLAST)

001: MGKGGSDENM AAWLLGVNTL KIQPFNLPAL GPHDVRVRMK AVGICGSDVH YLKTMRCADF VVKEPMVIGH ECAGIIEEVG GEVKTLVPGD RVALEPGISC
101: WRCNLCKEGR YNLCPEMKFF ATPPVHGSLA NQVVHPADLC FKLPDDISLE EGAMCEPLSV GVHACRRANV GPETNILVLG AGPIGLVTLL AARAFGAPRI
201: VIVDVDDYRL SVAKKLGADD IVKVSINIQD VATDIENIQK AMGGGIDASF DCAGFNKTMS TALGATRPGG KVCLVGMGHH EMTVPLTPAA AREVDVIGIF
301: RYKNTWPLCL EFLRSGKIDV KPLITHRFGF SQEEVEEAFE TSARGGDAIK VMFNL

Best Arabidopsis Sequence Match ( AT5G51970.1 )
(BLAST)

001: MGKGGMSQGE GSKVEEENMA AWLVGINTLK IQPFLLPSVG PHDVRVRMKA VGICGSDVHY LKTMRCADFV VKEPMVIGHE CAGIIEEVGE EVKHLVVGDR
101: VALEPGISCW RCNLCREGRY NLCPEMKFFA TPPVHGSLAN QVVHPADLCF KLPENVSLEE GAMCEPLSVG VHACRRAEVG PETNVLVMGA GPIGLVTMLA
201: ARAFSVPRIV IVDVDENRLA VAKQLGADEI VQVTTNLEDV GSEVEQIQKA MGSNIDVTFD CAGFNKTMST ALAATRCGGK VCLVGMGHGI MTVPLTPAAA
301: REVDVVGVFR YKNTWPLCLE FLTSGKIDVK PLITHRFGFS QKEVEDAFET SARGSNAIKV MFNL

Arabidopsis Description

SDHSorbitol dehydrogenase [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.