Factsheet for Os08t0545200-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G269800.1	Wheat	cytosol	88.08	89.04
TraesCS7B01G167500.1	Wheat	cytosol	87.8	88.77
TraesCS7A01G269300.1	Wheat	cytosol	87.8	88.77
Zm00001d031727_P004	Maize	cytosol, extracellular, plastid	87.8	88.52
EES15252	Sorghum	cytosol	88.35	87.63
GSMUA_Achr4P19640_001	Banana	cytosol	81.3	82.42
CDY00508	Canola	cytosol	74.8	79.77
Solyc01g006510.2.1	Tomato	cytosol, extracellular, nucleus, plastid	76.42	79.44
Bra028288.1-P	Field mustard	cytosol	74.25	79.19
PGSC0003DMT400081907	Potato	cytosol	74.25	79.19
KRH09146	Soybean	cytosol, nucleus	77.78	78.85
AT5G51970.1	Thale cress	cytosol	77.51	78.57
CDY58156	Canola	cytosol	77.24	78.3
VIT_16s0100g00300.t01	Wine grape	cytosol	76.69	77.53
GSMUA_Achr4P19630_001	Banana	cytosol	32.25	77.27
HORVU7Hr1G056770.2	Barley	cytosol	86.45	77.24
GSMUA_Achr4P19620_001	Banana	cytosol	35.23	73.03
PGSC0003DMT400065063	Potato	cytosol	67.21	69.86
KRH38627	Soybean	cytosol	77.51	62.04
Solyc06g035680.1.1	Tomato	cytosol	28.18	58.43
VIT_16s0100g00290.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	70.46	33.72
Os11t0210300-01	Rice	plasma membrane	25.47	24.8
Os07t0621800-01	Rice	cytosol	26.02	24.62
Os11t0210500-01	Rice	cytosol, plastid	24.39	23.75
Os03t0189600-01	Rice	cytosol, plasma membrane, plastid	24.39	23.75
Os02t0815500-01	Rice	plasma membrane, plastid	23.58	22.83
Os08t0109200-01	Rice	mitochondrion	26.29	22.66
Os02t0637700-01	Rice	plastid	23.31	22.57
Os10t0159800-01	Rice	cytosol	24.39	22.33
Os11t0210600-01	Rice	cytosol	17.62	21.89
Os03t0189400-01	Rice	cytosol, plasma membrane	22.49	21.78

Protein Annotations

Gene3D:3.40.50.720	MapMan:3.5.2	Gene3D:3.90.180.10	EntrezGene:4346217	InterPro:ADH_C	InterPro:ADH_N
InterPro:ADH_Zn_CS	EMBL:AK063995	EMBL:AK101517	ProteinID:BAD09222.1	ProteinID:BAD09736.1	ProteinID:BAF24326.1
ProteinID:BAT06532.1	ProteinID:EEE69096.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf
InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os08g0545200	EnsemblPlants:Os08t0545200-02	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER
ScanProsite:PS00059	PANTHER:PTHR43161	PANTHER:PTHR43161:SF8	UniProt:Q6ZBH2	SMART:SM00829	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI000023AD6C	RefSeq:XP_015650453.1	SEG:seg	:	:

Description

dehydrogenase 1Alcohol dehydrogenase superfamily, zinc-containing protein. (Os08t0545200-01);Alcohol dehydrogenase superfamily, zinc-containing protein. (Os08t0545200-02)

Coordinates

chr8:+:27315970..27318463

Molecular Weight (calculated)

39333.9 Da

IEP (calculated)

6.433

GRAVY (calculated)

0.152

Length

369 amino acids

Sequence
(BLAST)

001: MGKGGKGAEA AAAAVAGAGE EENMAAWLVA KNTLKIMPFK LPPVGPYDVR VRMKAVGICG SDVHYLREMR IAHFVVKEPM VIGHECAGVI EEVGSGVTHL
101: AVGDRVALEP GISCWRCRHC KGGRYNLCED MKFFATPPVH GSLANQIVHP GDLCFKLPEN VSLEEGAMCE PLSVGVHACR RADVGPETGV LIMGAGPIGL
201: VTLLAARAFG ATRVVIVDVD EHRLSVARSL GADAAVRVSA RAEDVGEEVE RIRAAMGGDI DVSLDCAGFS KTVATALEAT RGGGKVCLVG MGHNEMTVPL
301: TSAAIREVDV VGIFRYKDTW PLCIEFLRSG KIDVKPLITH RFGFSQEDVE EAFEVSARGR DAIKVMFNL

Best Arabidopsis Sequence Match ( AT5G51970.1 )
(BLAST)

001: MGKGGMSQGE GSKVEEENMA AWLVGINTLK IQPFLLPSVG PHDVRVRMKA VGICGSDVHY LKTMRCADFV VKEPMVIGHE CAGIIEEVGE EVKHLVVGDR
101: VALEPGISCW RCNLCREGRY NLCPEMKFFA TPPVHGSLAN QVVHPADLCF KLPENVSLEE GAMCEPLSVG VHACRRAEVG PETNVLVMGA GPIGLVTMLA
201: ARAFSVPRIV IVDVDENRLA VAKQLGADEI VQVTTNLEDV GSEVEQIQKA MGSNIDVTFD CAGFNKTMST ALAATRCGGK VCLVGMGHGI MTVPLTPAAA
301: REVDVVGVFR YKNTWPLCLE FLTSGKIDVK PLITHRFGFS QKEVEDAFET SARGSNAIKV MFNL

Arabidopsis Description

SDHSorbitol dehydrogenase [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.