Factsheet for VIT_16s0100g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
plasma membrane 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0100g00300.t01	Wine grape	cytosol	36.97	78.08
PGSC0003DMT400065063	Potato	cytosol	35.28	76.62
GSMUA_Achr4P19620_001	Banana	cytosol	17.12	74.16
TraesCS7D01G269800.1	Wheat	cytosol	34.5	72.88
TraesCS7A01G269300.1	Wheat	cytosol	34.5	72.88
TraesCS7B01G167500.1	Wheat	cytosol	34.5	72.88
Os08t0545200-02	Rice	cytosol, plasma membrane, plastid	33.72	70.46
Zm00001d031727_P004	Maize	cytosol, extracellular, plastid	33.33	70.22
EES15252	Sorghum	cytosol	33.59	69.62
HORVU7Hr1G056770.2	Barley	cytosol	35.28	65.86
Solyc06g035680.1.1	Tomato	cytosol	14.53	62.92
VIT_07s0005g04610.t01	Wine grape	cytosol	4.41	28.1
VIT_07s0005g04600.t01	Wine grape	cytosol	7.65	25.0
VIT_18s0001g15410.t01	Wine grape	cytosol	11.8	23.95
VIT_18s0001g00380.t01	Wine grape	cytosol	11.8	23.76
VIT_07s0031g03150.t01	Wine grape	mitochondrion	12.97	23.75
VIT_04s0044g01110.t01	Wine grape	cytosol	11.67	23.68
VIT_16s0039g01500.t01	Wine grape	cytosol	5.45	23.6
VIT_18s0001g00410.t01	Wine grape	cytosol	12.06	23.54
VIT_04s0044g01130.t01	Wine grape	cytosol	11.54	23.42
VIT_02s0025g02730.t01	Wine grape	cytosol	11.93	23.35
VIT_18s0001g15450.t01	Wine grape	mitochondrion	11.93	21.55
VIT_06s0004g04330.t01	Wine grape	cytosol	11.02	21.46
VIT_16s0039g00320.t01	Wine grape	cytosol	10.25	20.84
VIT_18s0001g06360.t01	Wine grape	cytosol	10.38	20.67
VIT_06s0004g04320.t01	Wine grape	mitochondrion, plastid	9.99	20.53
VIT_06s0004g04310.t01	Wine grape	plastid	9.47	19.26
VIT_04s0044g01120.t01	Wine grape	cytosol	11.8	15.42

Protein Annotations

EntrezGene:100232980	wikigene:100232980	EntrezGene:100257330	wikigene:100257330	Gene3D:3.40.50.720	MapMan:3.5.2
Gene3D:3.90.180.10	ProteinID:ABA01327	ProteinID:ABA01327.1	InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS
EMBL:AM431054	ProteinID:CAN73609	ProteinID:CAN73609.1	ProteinID:CCB56478	ProteinID:CCB56478.1	EMBL:DQ124868
EMBL:FN596000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491	GO:GO:0046183
GO:GO:0046872	GO:GO:0055114	GO:GO:0102198	InterPro:GroES-like_sf	EntrezGene:LOC100232980	wikigene:LOC100232980
EntrezGene:LOC100257330	wikigene:LOC100257330	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER
ScanProsite:PS00059	PANTHER:PTHR43161	PANTHER:PTHR43161:SF8	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735
TIGR:TC52651	UniParc:UPI0002107FFB	ArrayExpress:VIT_16s0100g00290	EnsemblPlantsGene:VIT_16s0100g00290	EnsemblPlants:VIT_16s0100g00290.t01	unigene:Vvi.18894
unigene:Vvi.826	RefSeq:XP_002267662	RefSeq:XP_002267662.2	:	:	:

Description

No Description!

Coordinates

chr16:-:15651474..15669267

Molecular Weight (calculated)

83141.5 Da

IEP (calculated)

7.715

GRAVY (calculated)

0.073

Length

771 amino acids

Sequence
(BLAST)

001: MGAWLLGIKT LKIQPYILPS LGPYVVKVRI KAVGICGSDV HHFKMGKGGN SEDAVSSKEH GEENMAAWLL GIKTLKIQPY ILPSLGPHDV KVRIKAVGIC
101: GSDVHHFKTM RCANFIVKKP MVIGHECAGI IEEVGSEVKN LVVGDRVALE PGISCNRCSL CRNGQYNLCR EMKFFGSPPT NGSLANQVVH PSNLCFKLPD
201: NVSLEEGAMC EPLSVGIHAC RRANVGPETN VLIMGSGPIG LVTMLAARAF GAPRIVLVDV DDQRLAIAKD LGADDIIRVS TNIQDLDEEV AKIQSTMVTG
301: VDVSLDCVGF NKTMSTALNA TRAGGKVCLV GLAQSEMTVP LTPAAAREVD IVGIFRYRNT WPLCLEFLRS GKIDVKPLIT HRFTFSQKDV EEAFETSARG
401: GNAIKMGKGG NSEDAVSGKE HGEENMAAWL LGIKTLKIQP YILPSLGPYD VKVRIKAVGI CGSDVHHFKT MRCANFIVKK PMVIGHECAG IIEEVGSEVK
501: NLVAGDRVAL EPGISCNRCS LCRNGQYNLC REMKFFGSPP TNGSLANQVV HPSNLCFKLP DNVSLEEGAM CEPLSVGIHA CRRANVGPET NVLIMGSGPI
601: GLVTMLAARA FGAPRIVLVD VDDQRLAIAK DLGADDIIRV STNIQDLDEE VAKIQSTMVT GVDVSFDCVG FNKTMSTALN ATRAGGKVCL VGLAQSEMTV
701: PLTPAAAREV DIVGIFRYRN TWPLCLEFLR SGKIDVKPLI THRFTFSQKD VEEAFETSAR GGNAIKVMFN L

Best Arabidopsis Sequence Match ( AT5G51970.1 )
(BLAST)

001: MGKGGMSQGE GSKVEEENMA AWLVGINTLK IQPFLLPSVG PHDVRVRMKA VGICGSDVHY LKTMRCADFV VKEPMVIGHE CAGIIEEVGE EVKHLVVGDR
101: VALEPGISCW RCNLCREGRY NLCPEMKFFA TPPVHGSLAN QVVHPADLCF KLPENVSLEE GAMCEPLSVG VHACRRAEVG PETNVLVMGA GPIGLVTMLA
201: ARAFSVPRIV IVDVDENRLA VAKQLGADEI VQVTTNLEDV GSEVEQIQKA MGSNIDVTFD CAGFNKTMST ALAATRCGGK VCLVGMGHGI MTVPLTPAAA
301: REVDVVGVFR YKNTWPLCLE FLTSGKIDVK PLITHRFGFS QKEVEDAFET SARGSNAIKV MFNL

Arabidopsis Description

SDHSorbitol dehydrogenase [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.