Factsheet for PGSC0003DMT400065063

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g035680.1.1	Tomato	cytosol	42.54	84.83
PGSC0003DMT400081907	Potato	cytosol	71.83	73.7
Os08t0545200-02	Rice	cytosol, plasma membrane, plastid	69.86	67.21
TraesCS7D01G269800.1	Wheat	cytosol	69.01	67.12
TraesCS7B01G167500.1	Wheat	cytosol	69.01	67.12
TraesCS7A01G269300.1	Wheat	cytosol	69.01	67.12
EES15252	Sorghum	cytosol	69.01	65.86
GSMUA_Achr4P19620_001	Banana	cytosol	32.96	65.73
Zm00001d031727_P004	Maize	cytosol, extracellular, plastid	67.61	65.57
HORVU7Hr1G056770.2	Barley	cytosol	68.45	58.84
VIT_16s0100g00290.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	76.62	35.28
PGSC0003DMT400019942	Potato	cytosol	25.92	24.27
PGSC0003DMT400059936	Potato	plastid	29.01	23.84
PGSC0003DMT400079071	Potato	cytosol	24.23	22.63
PGSC0003DMT400047760	Potato	cytosol	23.66	22.46
PGSC0003DMT400038526	Potato	cytosol	19.15	22.37
PGSC0003DMT400025617	Potato	cytosol	24.23	22.16
PGSC0003DMT400075618	Potato	cytosol	24.23	22.11
PGSC0003DMT400063937	Potato	cytosol	23.38	21.9
PGSC0003DMT400031884	Potato	cytosol	23.38	21.84
PGSC0003DMT400038525	Potato	cytosol	22.82	21.49
PGSC0003DMT400038529	Potato	cytosol	18.31	20.31
PGSC0003DMT400079175	Potato	cytosol	21.69	19.9

Protein Annotations

EntrezGene:102602218	Gene3D:3.40.50.720	MapMan:3.5.2	Gene3D:3.90.180.10	InterPro:ADH_C	InterPro:ADH_N
InterPro:ADH_Zn_CS	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:M1CDC1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	EnsemblPlantsGene:PGSC0003DMG400025281	PGSC:PGSC0003DMG400025281	EnsemblPlants:PGSC0003DMT400065063
InterPro:PKS_ER	ScanProsite:PS00059	PANTHER:PTHR43161	PANTHER:PTHR43161:SF8	SMART:SM00829	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI0002957918	RefSeq:XP_006340526.1	:	:	:

Description

L-idonate 5-dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400025281]

Coordinates

chr6:-:36730625..36732339

Molecular Weight (calculated)

38665.4 Da

IEP (calculated)

7.015

GRAVY (calculated)

0.143

Length

355 amino acids

Sequence
(BLAST)

001: MADEVEEENL AVWLLAIKTL RIQPFSLPSL GPYDVKIRIK AVGICGSDIH HFKNMRVANF VVKKPMVLGH ECAGIVEQVG SQVKFLMIGD RVALEPGISC
101: RQCQLCKDGR YNLCRKMKFF GSPPTNGALA NQVVHPADLC FKLPDNVSLE EGAICEPLSV GVHACRRANV GPDTKLIIIG AGPIGLVTML AARAFGSPKI
201: VIVDVDDCRL SFAKDLGADE IIKVSSIMQD VEEEVVRIRN AMGGPVDLSF DCVGFNKTMT TALQATRTGG KVCLVGLGQS EMTLPLTSAA AREVDVIGIF
301: RYRNTWPLCI ELLRTGEIDV KPLITHRYNF TQEGVDEAFE TSSRGGNAIK VMFNL

Best Arabidopsis Sequence Match ( AT5G51970.1 )
(BLAST)

001: MGKGGMSQGE GSKVEEENMA AWLVGINTLK IQPFLLPSVG PHDVRVRMKA VGICGSDVHY LKTMRCADFV VKEPMVIGHE CAGIIEEVGE EVKHLVVGDR
101: VALEPGISCW RCNLCREGRY NLCPEMKFFA TPPVHGSLAN QVVHPADLCF KLPENVSLEE GAMCEPLSVG VHACRRAEVG PETNVLVMGA GPIGLVTMLA
201: ARAFSVPRIV IVDVDENRLA VAKQLGADEI VQVTTNLEDV GSEVEQIQKA MGSNIDVTFD CAGFNKTMST ALAATRCGGK VCLVGMGHGI MTVPLTPAAA
301: REVDVVGVFR YKNTWPLCLE FLTSGKIDVK PLITHRFGFS QKEVEDAFET SARGSNAIKV MFNL

Arabidopsis Description

SDHSorbitol dehydrogenase [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.