Factsheet for GSMUA_Achr4P19620_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P19640_001	Banana	cytosol	83.15	40.66
Zm00001d031727_P004	Maize	cytosol, extracellular, plastid	72.47	35.25
Os08t0545200-02	Rice	cytosol, plasma membrane, plastid	73.03	35.23
TraesCS7D01G269800.1	Wheat	cytosol	71.91	35.07
TraesCS7B01G167500.1	Wheat	cytosol	71.91	35.07
TraesCS7A01G269300.1	Wheat	cytosol	71.91	35.07
EES15252	Sorghum	cytosol	72.47	34.68
PGSC0003DMT400065063	Potato	cytosol	65.73	32.96
HORVU7Hr1G056770.2	Barley	cytosol	71.91	30.99
Solyc06g035680.1.1	Tomato	cytosol	23.6	23.6
VIT_16s0100g00290.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	74.16	17.12
GSMUA_Achr5P25890_001	Banana	cytosol	27.53	13.17
GSMUA_Achr1P05790_001	Banana	cytosol, plasma membrane	25.84	12.14
GSMUA_Achr8P29470_001	Banana	cytosol	25.28	11.84
GSMUA_Achr11P...	Banana	cytosol	25.84	11.65
GSMUA_Achr9P08450_001	Banana	cytosol	24.16	11.32
GSMUA_Achr6P18590_001	Banana	cytosol	24.16	11.32
GSMUA_Achr2P08040_001	Banana	cytosol	24.16	11.32
GSMUA_Achr4P29520_001	Banana	cytosol	24.72	11.03
GSMUA_Achr4P25400_001	Banana	cytosol, endoplasmic reticulum	21.91	10.24
GSMUA_Achr7P11730_001	Banana	plastid	20.79	5.86
GSMUA_Achr4P19630_001	Banana	cytosol	3.93	4.55
GSMUA_Achr7P11720_001	Banana	mitochondrion, nucleus, plastid	20.79	3.94

Protein Annotations

EnsemblPlants:GSMUA_Achr4P19620_001	EnsemblPlants:GSMUA_Achr4T19620_001	EnsemblPlantsGene:GSMUA_Achr4G19620_001	Gene3D:3.90.180.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0055114
InterPro:ADH_N	InterPro:ADH_Zn_CS	InterPro:GroES-like_sf	PANTHER:PTHR43161	PANTHER:PTHR43161:SF8	PFAM:PF08240
ScanProsite:PS00059	SUPFAM:SSF50129	UniParc:UPI00029548C2	UniProt:M0SQC5	MapMan:3.5.2	:

Description

L-idonate 5-dehydrogenase [Source:GMGC_GENE;Acc:GSMUA_Achr4G19620_001]

Coordinates

chr4:+:20527696..20529060

Molecular Weight (calculated)

19249.8 Da

IEP (calculated)

7.915

GRAVY (calculated)

0.188

Length

178 amino acids

Sequence
(BLAST)

001: MGKGGEVSGD GAKVEEENMA AWLVAVNTLK IQPFRLPPLG PHDVRVRIKA VGICGSDVHH LKTMRCAHFV VKEPMVIGHE CAGVIEEVGC EVKSLVVGDR
101: VALEPGISCG HCKYCKGGRY NLCRSMRFFG SPPVNGSLAN QVVHPANLCF RLPENVSLEE GQCVSPVVLR FMLAVMLL

Best Arabidopsis Sequence Match ( AT5G51970.1 )
(BLAST)

001: MGKGGMSQGE GSKVEEENMA AWLVGINTLK IQPFLLPSVG PHDVRVRMKA VGICGSDVHY LKTMRCADFV VKEPMVIGHE CAGIIEEVGE EVKHLVVGDR
101: VALEPGISCW RCNLCREGRY NLCPEMKFFA TPPVHGSLAN QVVHPADLCF KLPENVSLEE GAMCEPLSVG VHACRRAEVG PETNVLVMGA GPIGLVTMLA
201: ARAFSVPRIV IVDVDENRLA VAKQLGADEI VQVTTNLEDV GSEVEQIQKA MGSNIDVTFD CAGFNKTMST ALAATRCGGK VCLVGMGHGI MTVPLTPAAA
301: REVDVVGVFR YKNTWPLCLE FLTSGKIDVK PLITHRFGFS QKEVEDAFET SARGSNAIKV MFNL

Arabidopsis Description

SDHSorbitol dehydrogenase [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.