CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0100g00300.t01	Wine grape	cytosol	87.09	86.85
Bra028288.1-P	Field mustard	cytosol	82.14	86.42
CDY00508	Canola	cytosol	81.59	85.84
Solyc01g006510.2.1	Tomato	cytosol, extracellular, nucleus, plastid	83.52	85.63
PGSC0003DMT400081907	Potato	cytosol	81.04	85.26
CDY58156	Canola	cytosol	85.16	85.16
GSMUA_Achr4P19640_001	Banana	cytosol	83.52	83.52
AT5G51970.1	Thale cress	cytosol	83.52	83.52
TraesCS7D01G269800.1	Wheat	cytosol	80.49	80.27
TraesCS7B01G167500.1	Wheat	cytosol	80.49	80.27
TraesCS7A01G269300.1	Wheat	cytosol	80.49	80.27
Os08t0545200-02	Rice	cytosol, plasma membrane, plastid	78.85	77.78
GSMUA_Achr4P19630_001	Banana	cytosol	32.69	77.27
EES15252	Sorghum	cytosol	78.57	76.88
Zm00001d031727_P004	Maize	cytosol, extracellular, plastid	76.92	76.5
KRH38627	Soybean	cytosol	96.15	75.92
HORVU7Hr1G056770.2	Barley	cytosol	79.67	70.22
KRH19643	Soybean	cytosol	8.24	26.09
KRG95774	Soybean	cytosol, nucleus	25.27	24.27
KRH16454	Soybean	cytosol	24.73	24.26
KRH14698	Soybean	cytosol	5.22	24.05
KRH67486	Soybean	nucleus	25.0	24.01
KRH32257	Soybean	cytosol	25.0	23.95
KRH15944	Soybean	endoplasmic reticulum	24.73	23.68
KRH64550	Soybean	endoplasmic reticulum	24.73	23.68
KRH53384	Soybean	cytosol, endoplasmic reticulum, mitochondrion	24.45	23.36
KRH23989	Soybean	cytosol	23.9	23.2
KRH23996	Soybean	cytosol	23.9	23.2
KRH59676	Soybean	mitochondrion	26.92	23.0
KRH18052	Soybean	cytosol	23.9	22.96
KRH41009	Soybean	mitochondrion, plastid	26.92	22.95
KRH64058	Soybean	cytosol, endoplasmic reticulum	23.9	22.83
KRH14692	Soybean	cytosol	4.95	22.78
KRH73446	Soybean	cytosol	23.9	22.48
KRH14690	Soybean	cytosol	23.9	22.48
KRH23997	Soybean	cytosol	21.7	21.82
KRH08072	Soybean	cytosol	19.23	21.6
KRH73443	Soybean	cytosol	22.8	21.5
KRH23988	Soybean	endoplasmic reticulum, extracellular	5.22	21.11
KRH62448	Soybean	cytosol, vacuole	8.79	21.05
KRH65753	Soybean	cytosol	11.26	21.03
KRG89834	Soybean	cytosol	22.53	20.92
KRH38840	Soybean	cytosol	21.43	20.86
KRH23995	Soybean	nucleus	21.43	20.74
KRH75889	Soybean	cytosol	22.25	20.25
KRH49366	Soybean	cytosol, nucleus	21.98	20.0
KRH00223	Soybean	cytosol, nucleus	20.88	19.14
KRH75885	Soybean	cytosol	20.88	19.1
KRH75888	Soybean	cytosol	7.14	18.98
KRH75887	Soybean	cytosol	9.62	17.86
KRH14696	Soybean	cytosol	6.04	16.67
KRH65755	Soybean	cytosol	9.89	16.14
KRG88472	Soybean	cytosol	6.32	15.33
KRH65756	Soybean	cytosol	6.32	13.29

Protein Annotations

EntrezGene:100820630	Gene3D:3.40.50.720	MapMan:3.5.2	Gene3D:3.90.180.10	EMBL:ACUP02010271	InterPro:ADH_C
InterPro:ADH_N	InterPro:ADH_Zn_CS	EnsemblPlantsGene:GLYMA_16G199200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:GroES-like_sf	UniProt:I1MQ30	EnsemblPlants:KRH09146	ProteinID:KRH09146	ProteinID:KRH09146.1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER	ScanProsite:PS00059	PANTHER:PTHR43161	PANTHER:PTHR43161:SF8
SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI000233AF0A	:	:

Description

hypothetical protein

Coordinates

chr16:+:36055701..36061119

Molecular Weight (calculated)

39217.9 Da

IEP (calculated)

6.734

GRAVY (calculated)

0.091

Length

364 amino acids

Sequence
(BLAST)

001: MGKGGMSIDE HGEGKEENMA AWLVGMNTLK IQPFKLPTLG PHDVRVRMKA VGICGSDVHY LKTLRCAHFI VKEPMVIGHE CAGIIEEVGS QVKSLVPGDR
101: VAIEPGISCW HCNHCKHGRY NLCDDMKFFA TPPVHGSLAN QIVHPADLCF KLPDNVSLEE GAMCEPLSVG VHACRRANIG PETNVLIMGA GPIGLVTMLA
201: ARAFGAPKTV IVDVDDHRLS VAKSLGADDI IKVSTNIKDV AEEVVQIQKV MGAGIDVTFD CAGFDKTMST ALSATQPGGK VCLVGMGHSE MTVPLTPAAA
301: REVDVVGVFR YMNTWPLCLE FLRSGKIDVK PLITHRFGFS QKEVEEAFET SARGGNAIKV MFNL

Best Arabidopsis Sequence Match ( AT5G51970.1 )
(BLAST)

001: MGKGGMSQGE GSKVEEENMA AWLVGINTLK IQPFLLPSVG PHDVRVRMKA VGICGSDVHY LKTMRCADFV VKEPMVIGHE CAGIIEEVGE EVKHLVVGDR
101: VALEPGISCW RCNLCREGRY NLCPEMKFFA TPPVHGSLAN QVVHPADLCF KLPENVSLEE GAMCEPLSVG VHACRRAEVG PETNVLVMGA GPIGLVTMLA
201: ARAFSVPRIV IVDVDENRLA VAKQLGADEI VQVTTNLEDV GSEVEQIQKA MGSNIDVTFD CAGFNKTMST ALAATRCGGK VCLVGMGHGI MTVPLTPAAA
301: REVDVVGVFR YKNTWPLCLE FLTSGKIDVK PLITHRFGFS QKEVEDAFET SARGSNAIKV MFNL

Arabidopsis Description

SDHSorbitol dehydrogenase [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.