CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00223	Soybean	cytosol, nucleus	90.0	90.68
KRH75885	Soybean	cytosol	79.5	79.9
KRH75889	Soybean	cytosol	77.75	77.75
KRH75888	Soybean	cytosol	25.75	75.18
KRH65755	Soybean	cytosol	41.0	73.54
KRH65753	Soybean	cytosol	35.0	71.79
VIT_02s0025g02730.t01	Wine grape	cytosol	67.75	68.78
PGSC0003DMT400031884	Potato	cytosol	64.75	68.16
Solyc08g083280.2.1	Tomato	cytosol	64.75	67.98
KRH65756	Soybean	cytosol	29.0	67.05
CDX93818	Canola	cytosol	66.0	67.01
CDY01241	Canola	cytosol	66.0	67.01
Bra023290.1-P	Field mustard	cytosol	65.75	66.75
AT1G32780.1	Thale cress	cytosol	65.75	66.75
AT1G64710.1	Thale cress	cytosol	62.5	65.79
CDY26918	Canola	cytosol	41.25	65.22
Bra010185.1-P	Field mustard	cytosol	41.25	65.22
CDY59757	Canola	cytosol	61.25	64.47
Bra031208.1-P	Field mustard	cytosol	61.0	63.87
TraesCS1A01G050100.2	Wheat	cytosol	62.75	63.71
CDY13798	Canola	cytosol	60.75	63.61
TraesCS1D01G052200.1	Wheat	cytosol	62.5	63.45
TraesCS1B01G066400.1	Wheat	cytosol	62.25	63.2
Os10t0159800-01	Rice	cytosol	62.25	61.79
EER91718	Sorghum	cytosol	58.5	59.39
EER91716	Sorghum	cytosol	59.25	59.25
GSMUA_Achr4P29520_001	Banana	cytosol	58.0	58.15
Zm00001d030347_P001	Maize	vacuole	59.25	56.7
KRH32257	Soybean	cytosol	50.5	53.16
KRH75887	Soybean	cytosol	26.0	53.06
KRH67486	Soybean	nucleus	50.25	53.03
KRG95774	Soybean	cytosol, nucleus	50.25	53.03
Zm00001d030348_P001	Maize	cytosol	55.0	51.64
KRH08072	Soybean	cytosol	41.0	50.62
KRH64058	Soybean	cytosol, endoplasmic reticulum	47.25	49.61
KRH15944	Soybean	endoplasmic reticulum	46.5	48.95
KRH38840	Soybean	cytosol	45.0	48.13
KRG89834	Soybean	cytosol	47.0	47.96
KRH73443	Soybean	cytosol	46.0	47.67
KRH64550	Soybean	endoplasmic reticulum	45.25	47.63
KRH53384	Soybean	cytosol, endoplasmic reticulum, mitochondrion	45.25	47.51
CDX73269	Canola	cytosol	48.75	47.22
KRH18052	Soybean	cytosol	44.5	46.97
KRH19643	Soybean	cytosol	13.5	46.96
KRH16454	Soybean	cytosol	43.5	46.9
KRH14690	Soybean	cytosol	45.25	46.77
KRH73446	Soybean	cytosol	44.75	46.25
KRG88472	Soybean	cytosol	17.0	45.33
KRH62448	Soybean	cytosol, vacuole	16.0	42.11
KRH23997	Soybean	cytosol	38.0	41.99
KRH23989	Soybean	cytosol	38.75	41.33
KRH23996	Soybean	cytosol	38.75	41.33
KRH23995	Soybean	nucleus	37.75	40.16
KRH14698	Soybean	cytosol	7.75	39.24
KRH14692	Soybean	cytosol	7.75	39.24
KRH14696	Soybean	cytosol	12.0	36.36
KRH23988	Soybean	endoplasmic reticulum, extracellular	7.0	31.11
KRH41009	Soybean	mitochondrion, plastid	27.25	25.53
KRH59676	Soybean	mitochondrion	27.0	25.35
KRH09146	Soybean	cytosol, nucleus	20.0	21.98
KRH38627	Soybean	cytosol	19.0	16.49

Protein Annotations

EntrezGene:100819896	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	EMBL:ACUP02004357	InterPro:ADH_C
InterPro:ADH_N	InterPro:ADH_Zn_CS	EnsemblPlantsGene:GLYMA_07G149400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:GroES-like_sf	UniProt:I1KKE1	EnsemblPlants:KRH49366	ProteinID:KRH49366	ProteinID:KRH49366.1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00107	PFAM:PF08240	ScanProsite:PS00059	PANTHER:PTHR43880	PANTHER:PTHR43880:SF18	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI0001CAEE38	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:17948598..17955696

Molecular Weight (calculated)

43211.9 Da

IEP (calculated)

6.146

GRAVY (calculated)

-0.000

Length

400 amino acids

Sequence
(BLAST)

001: MACPAMANGN GSLKNLKLND TKGKTITCKA AVVYGPGEPF VVENILVHPP QKMEVRIKIL YTSICHTDLS AWRGVNEAQR AYPRIFGHEA SGIVESVGEG
101: VSEVEEGDIV VPIFNGECGE CSMCKCEKTN LCERFGVDAT KKVMEGDGTT RFSTVNGKPI FHFLNTSTFS EYTVVDSACV VKFLDSDHSL SHKNLTLLSC
201: GVSTGVGGAW NTANVHSGST VAIFGLGVVG LAVAEGARAR GASKIIGVDI NPDKFIKAQT MGVTDFINPD DEEKPVYERI REITDGGVHY SFECTGNVDV
301: LRDAFLSSHE GWGLTVILGV HASPKLLPIH PMELLDGRNI VGCVFGGFKG RSQLPHFAKE CGQGVVKLDN FITHELPFEE IDKAFDLLIT GKSLRCLLHF

Best Arabidopsis Sequence Match ( AT1G32780.1 )
(BLAST)

001: MAETQGKVIT CKAAVVWGPK VPLVIQEICV DPPQKMEVRV KILYSSICHT DLGCWNGTNE AERAFPRILG HEAVGIVESV GEGVKDVKEG DYVIPTFNGE
101: CGECKVCKRE ESNLCERYHV DPMKRVMVND GGTRFSTTIN KDGGSSQSQP IYHFLNTSTF TEYTVLDSAC VVKIDPNSPL KQMSLLSCGV STGVGAAWNI
201: ANVKEGKSTA VFGLGSVGLA VAEGARARGA SRIIGVDANA SKFEKGKLMG VTDFINPKDL TKPVHQMIRE ITGGGVDYSF ECTGNVDVLR EAFLSTHVGW
301: GSTVLVGIYP TPRTLPLHPM ELFDGRRITG SVFGGFKPKS QLPNFAQQCM KGVVKLEPFI TNELPFEKIN DAFQLLRDGK SLRCILQISK LLKR

Arabidopsis Description

Alcohol dehydrogenase-like 3 [Source:UniProtKB/Swiss-Prot;Acc:A1L4Y2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.