CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49366	Soybean	cytosol, nucleus	90.68	90.0
KRH75885	Soybean	cytosol	80.1	79.9
KRH75889	Soybean	cytosol	77.58	77.0
KRH75888	Soybean	cytosol	25.94	75.18
KRH65755	Soybean	cytosol	40.55	72.2
KRH65753	Soybean	cytosol	35.26	71.79
PGSC0003DMT400031884	Potato	cytosol	68.01	71.05
Solyc08g083280.2.1	Tomato	cytosol	67.76	70.6
VIT_02s0025g02730.t01	Wine grape	cytosol	68.77	69.29
CDX93818	Canola	cytosol	68.01	68.53
CDY01241	Canola	cytosol	68.01	68.53
Bra023290.1-P	Field mustard	cytosol	67.76	68.27
AT1G32780.1	Thale cress	cytosol	67.0	67.51
CDY26918	Canola	cytosol	42.57	66.8
Bra010185.1-P	Field mustard	cytosol	42.57	66.8
AT1G64710.1	Thale cress	cytosol	62.97	65.79
KRH65756	Soybean	cytosol	28.46	65.32
CDY59757	Canola	cytosol	61.96	64.74
Bra031208.1-P	Field mustard	cytosol	61.71	64.14
CDY13798	Canola	cytosol	61.46	63.87
TraesCS1D01G052200.1	Wheat	cytosol	62.47	62.94
TraesCS1B01G066400.1	Wheat	cytosol	62.22	62.69
TraesCS1A01G050100.2	Wheat	cytosol	62.22	62.69
Os10t0159800-01	Rice	cytosol	63.48	62.53
EER91716	Sorghum	cytosol	60.2	59.75
EER91718	Sorghum	cytosol	58.69	59.14
GSMUA_Achr4P29520_001	Banana	cytosol	59.19	58.9
Zm00001d030347_P001	Maize	vacuole	59.7	56.7
KRH75887	Soybean	cytosol	26.2	53.06
KRH32257	Soybean	cytosol	50.63	52.89
KRH67486	Soybean	nucleus	50.38	52.77
KRG95774	Soybean	cytosol, nucleus	50.38	52.77
Zm00001d030348_P001	Maize	cytosol	54.66	50.94
KRH64058	Soybean	cytosol, endoplasmic reticulum	48.36	50.39
KRH08072	Soybean	cytosol	40.81	50.0
KRH15944	Soybean	endoplasmic reticulum	47.36	49.47
KRH19643	Soybean	cytosol	14.11	48.7
KRH18052	Soybean	cytosol	45.84	48.02
KRH16454	Soybean	cytosol	44.84	47.98
CDX73269	Canola	cytosol	49.87	47.94
KRH64550	Soybean	endoplasmic reticulum	45.59	47.63
KRH38840	Soybean	cytosol	44.84	47.59
KRH53384	Soybean	cytosol, endoplasmic reticulum, mitochondrion	45.59	47.51
KRH73443	Soybean	cytosol	46.1	47.41
KRG89834	Soybean	cytosol	46.6	47.19
KRH14690	Soybean	cytosol	44.84	45.99
KRH73446	Soybean	cytosol	44.58	45.74
KRG88472	Soybean	cytosol	17.13	45.33
KRH23997	Soybean	cytosol	39.55	43.37
KRH23996	Soybean	cytosol	40.55	42.93
KRH23989	Soybean	cytosol	40.55	42.93
KRH23995	Soybean	nucleus	40.05	42.29
KRH62448	Soybean	cytosol, vacuole	15.87	41.45
KRH14698	Soybean	cytosol	8.06	40.51
KRH14692	Soybean	cytosol	8.06	40.51
KRH14696	Soybean	cytosol	12.09	36.36
KRH23988	Soybean	endoplasmic reticulum, extracellular	7.05	31.11
KRH41009	Soybean	mitochondrion, plastid	27.46	25.53
KRH59676	Soybean	mitochondrion	27.2	25.35
KRH09146	Soybean	cytosol, nucleus	19.14	20.88
KRH38627	Soybean	cytosol	18.14	15.62

Protein Annotations

EntrezGene:100815166	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	EMBL:ACUP02011407	InterPro:ADH_C
InterPro:ADH_N	InterPro:ADH_Zn_CS	EnsemblPlantsGene:GLYMA_18G200300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:GroES-like_sf	UniProt:I1N2X1	EnsemblPlants:KRH00223	ProteinID:KRH00223	ProteinID:KRH00223.1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00107	PFAM:PF08240	ScanProsite:PS00059	PANTHER:PTHR43880	PANTHER:PTHR43880:SF18	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI0001CA9C2E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:47969051..47975187

Molecular Weight (calculated)

42740.5 Da

IEP (calculated)

6.777

GRAVY (calculated)

0.030

Length

397 amino acids

Sequence
(BLAST)

001: MACPAMANGN DSLNLKPSET KGKTITCKAA VAYGPGEPFV VENILVHPPQ KMEVRIKILY TSICHTDLSA WRGVSEAQRA YPRILGHEAS GIVESVGEGV
101: SEVKEGDIVV PIFNGECGEC TLCKCEKTNK CEIYGVNPMK KVMEGDGTSR FSTVHGKPIF HFLNTSTFSE YTVVDSACVV KFVSTDHSLS IKNLTLLSCG
201: VSTGVGAAWN TANVHSGSTV AVFGLGAVGL AVAEGARARG ASKIIGVDIN PDKFIKAMGV TNFINPKDEE KPVYERIREM TDGGVHYSFE CTGNVDVLRD
301: AFLSAHEGWG LTVVLGIHAS PTLLPIHPME LFDGRNIVGS VFGGFKGRSH LPHFAKQCGQ GVVKLDNFIT HELPLEEIDK AFDLLITGKS LRCLLHF

Best Arabidopsis Sequence Match ( AT1G32780.1 )
(BLAST)

001: MAETQGKVIT CKAAVVWGPK VPLVIQEICV DPPQKMEVRV KILYSSICHT DLGCWNGTNE AERAFPRILG HEAVGIVESV GEGVKDVKEG DYVIPTFNGE
101: CGECKVCKRE ESNLCERYHV DPMKRVMVND GGTRFSTTIN KDGGSSQSQP IYHFLNTSTF TEYTVLDSAC VVKIDPNSPL KQMSLLSCGV STGVGAAWNI
201: ANVKEGKSTA VFGLGSVGLA VAEGARARGA SRIIGVDANA SKFEKGKLMG VTDFINPKDL TKPVHQMIRE ITGGGVDYSF ECTGNVDVLR EAFLSTHVGW
301: GSTVLVGIYP TPRTLPLHPM ELFDGRRITG SVFGGFKPKS QLPNFAQQCM KGVVKLEPFI TNELPFEKIN DAFQLLRDGK SLRCILQISK LLKR

Arabidopsis Description

Alcohol dehydrogenase-like 3 [Source:UniProtKB/Swiss-Prot;Acc:A1L4Y2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.