CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41009	Soybean	mitochondrion, plastid	95.77	95.55
CDX89070	Canola	cytosol	43.19	80.7
GSMUA_Achr5P25890_001	Banana	cytosol	67.37	77.15
CDX97482	Canola	cytosol	38.03	75.35
AT5G63620.1	Thale cress	mitochondrion	73.47	73.3
VIT_07s0031g03150.t01	Wine grape	mitochondrion	72.3	73.16
CDX84427	Canola	mitochondrion	73.71	72.18
CDY41524	Canola	mitochondrion	73.71	72.18
Bra038649.1-P	Field mustard	mitochondrion	73.47	71.95
TraesCS7A01G322200.1	Wheat	mitochondrion	69.95	71.81
TraesCS7B01G223100.1	Wheat	mitochondrion	69.72	71.57
TraesCS7D01G319100.1	Wheat	mitochondrion	69.72	71.57
Zm00001d035032_P003	Maize	mitochondrion	68.78	70.43
Solyc05g056540.2.1	Tomato	plastid	71.36	70.37
CDX81190	Canola	cytosol	18.78	70.18
PGSC0003DMT400059936	Potato	plastid	71.13	70.14
Zm00001d049716_P001	Maize	mitochondrion	68.31	69.78
Zm00001d036209_P001	Maize	cytosol	46.95	69.69
KXG24208	Sorghum	mitochondrion	68.54	69.36
HORVU7Hr1G077200.1	Barley	mitochondrion	70.42	67.57
CDY30977	Canola	cytosol	45.77	67.24
Bra037749.1-P	Field mustard	cytosol	29.34	66.84
Os08t0109200-01	Rice	mitochondrion	67.14	66.82
KRH19643	Soybean	cytosol	8.69	32.17
KRH64550	Soybean	endoplasmic reticulum	27.46	30.79
KRH15944	Soybean	endoplasmic reticulum	27.23	30.53
KRH53384	Soybean	cytosol, endoplasmic reticulum, mitochondrion	27.23	30.45
KRH16454	Soybean	cytosol	26.29	30.19
KRH64058	Soybean	cytosol, endoplasmic reticulum	27.0	30.18
KRH18052	Soybean	cytosol	26.53	29.82
KRG95774	Soybean	cytosol, nucleus	26.29	29.55
KRH67486	Soybean	nucleus	26.29	29.55
KRH32257	Soybean	cytosol	26.29	29.47
KRH14690	Soybean	cytosol	25.59	28.17
KRG89834	Soybean	cytosol	25.82	28.06
KRH08072	Soybean	cytosol	21.13	27.78
KRH23995	Soybean	nucleus	24.41	27.66
KRH38840	Soybean	cytosol	24.18	27.54
KRH00223	Soybean	cytosol, nucleus	25.35	27.2
KRH23989	Soybean	cytosol	23.94	27.2
KRH23996	Soybean	cytosol	23.94	27.2
KRH49366	Soybean	cytosol, nucleus	25.35	27.0
KRH09146	Soybean	cytosol, nucleus	23.0	26.92
KRH75885	Soybean	cytosol	24.88	26.63
KRH14698	Soybean	cytosol	4.93	26.58
KRH14692	Soybean	cytosol	4.93	26.58
KRH75889	Soybean	cytosol	24.65	26.25
KRH23997	Soybean	cytosol	22.3	26.24
KRH73443	Soybean	cytosol	23.71	26.17
KRH73446	Soybean	cytosol	23.47	25.84
KRH62448	Soybean	cytosol, vacuole	8.45	23.68
KRH65755	Soybean	cytosol	12.21	23.32
KRH14696	Soybean	cytosol	7.04	22.73
KRH65753	Soybean	cytosol	9.86	21.54
KRH75887	Soybean	cytosol	9.86	21.43
KRH38627	Soybean	cytosol	23.0	21.26
KRH65756	Soybean	cytosol	7.98	19.65
KRG88472	Soybean	cytosol	6.57	18.67
KRH75888	Soybean	cytosol	5.87	18.25
KRH23988	Soybean	endoplasmic reticulum, extracellular	3.76	17.78

Protein Annotations

EntrezGene:100802431	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	EMBL:ACUP02003338	InterPro:ADH_C
InterPro:ADH_N	EnsemblPlantsGene:GLYMA_05G197400	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:I1K548	ProteinID:KRH59675.1	EnsemblPlants:KRH59676
ProteinID:KRH59676	ProteinID:KRH59676.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER
PANTHER:PTHR43350	PANTHER:PTHR43350:SF8	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI000233A3FD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:38162563..38169228

Molecular Weight (calculated)

45423.6 Da

IEP (calculated)

8.059

GRAVY (calculated)

0.010

Length

426 amino acids

Sequence
(BLAST)

001: MTSAMVRRNI ATHYSKFASS WSLLSRHSSI LNPLSVSFSS FHSQGVGGDA LPSYMRGAVY WEPNKPLTIE EFNMPRPKAG EVLIKTKACG VCHSDLHVMK
101: GEIPFSSPCV VGHEITGEVV EHGALTDSKT IERLPVGSRV VGAFIMPCGN CSYCSKGHDD LCEAFFAYNR AKGTLYDGET RLFFRNSGKP AFMYSMGGLA
201: EYCVVPANGV SVLPDSLPYT ESAILGCAVF TAYGAMAHAA QVRPGDSVAV IGTGGVGSSC LQIARAFGAS DIIAVDVRDE KLQKAKTFGA THTVNSAKED
301: PIEKILEITG GKGVDVAVEA LGKPQTFAQC TQSVKDGGKA VMIGLAQAGS LGEVDINRLV RRKIQVIGSY GGRARQDLPK LIRLAETGIF NLGHAVSRTY
401: TFDEAGKAFQ DLNEGKIVGR AVIEII

Best Arabidopsis Sequence Match ( AT5G63620.1 )
(BLAST)

001: MAFAPILRRA SAVKNLFSLT RLAVGSALST RSLQTGASGD DSQSMGGYHV SPGGFMRGAV YREPNKPLTI EEFHIPRPKS NEILIKTKAC GVCHSDLHVM
101: KGEIPFASPC VIGHEITGEV VEHGPLTDHK IINRFPIGSR VVGAFIMPCG TCSYCAKGHD DLCEDFFAYN RAKGTLYDGE TRLFLRHDDS PVYMYSMGGM
201: AEYCVTPAHG LAPLPESLPY SESAILGCAV FTAYGAMAHA AEIRPGDSIA VIGIGGVGSS CLQIARAFGA SDIIAVDVQD DKLQKAKTLG ATHIVNAAKE
301: DAVERIREIT GGMGVDVAVE ALGKPQTFMQ CTLSVKDGGK AVMIGLSQAG SVGEIDINRL VRRKIKVIGS YGGRARQDLP KVVKLAESGI FNLTNAVSSK
401: YKFEDAGKAF QDLNEGKIVS RGVVEIL

Arabidopsis Description

At5g63620/MBK5_9 [Source:UniProtKB/TrEMBL;Acc:Q93ZM6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.