Factsheet for Solyc05g056540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059936	Potato	plastid	98.61	98.61
CDX89070	Canola	cytosol	41.2	78.07
GSMUA_Achr5P25890_001	Banana	cytosol	66.67	77.42
VIT_07s0031g03150.t01	Wine grape	mitochondrion	75.23	77.2
TraesCS7B01G223100.1	Wheat	mitochondrion	72.45	75.42
TraesCS7A01G322200.1	Wheat	mitochondrion	72.22	75.18
TraesCS7D01G319100.1	Wheat	mitochondrion	72.22	75.18
CDX97482	Canola	cytosol	37.04	74.42
Zm00001d049716_P001	Maize	mitochondrion	71.06	73.62
Zm00001d036209_P001	Maize	cytosol	48.61	73.17
Zm00001d035032_P003	Maize	mitochondrion	70.37	73.08
KXG24208	Sorghum	mitochondrion	70.37	72.21
KRH41009	Soybean	mitochondrion, plastid	71.06	71.9
AT5G63620.1	Thale cress	mitochondrion	70.83	71.66
KRH59676	Soybean	mitochondrion	70.37	71.36
Os08t0109200-01	Rice	mitochondrion	70.14	70.79
HORVU7Hr1G077200.1	Barley	mitochondrion	72.69	70.72
CDY41524	Canola	mitochondrion	71.06	70.57
CDX84427	Canola	mitochondrion	70.83	70.34
Bra038649.1-P	Field mustard	mitochondrion	70.83	70.34
CDY30977	Canola	cytosol	44.91	66.9
CDX81190	Canola	cytosol	17.59	66.67
Bra037749.1-P	Field mustard	cytosol	27.55	63.64
Solyc01g006510.2.1	Tomato	cytosol, extracellular, nucleus, plastid	23.38	28.45
Solyc03g044200.2.1	Tomato	cytosol	24.77	28.38
Solyc08g083280.2.1	Tomato	cytosol	24.77	28.08
Solyc12g094500.1.1	Tomato	cytosol	25.0	27.76
Solyc04g064710.2.1	Tomato	cytosol, plastid	24.31	27.7
Solyc04g074540.2.1	Tomato	cytosol	24.54	27.6
Solyc09g064370.2.1	Tomato	nucleus	24.31	27.49
Solyc11g071290.1.1	Tomato	cytosol	23.61	27.13
Solyc04g082180.2.1	Tomato	cytosol	24.07	26.67
Solyc06g072160.2.1	Tomato	cytosol	24.31	26.65
Solyc04g074530.2.1	Tomato	cytosol, plastid	24.31	26.65
Solyc04g082170.2.1	Tomato	cytosol	23.84	26.48
Solyc06g059740.2.1	Tomato	plastid	23.38	26.3
Solyc06g035680.1.1	Tomato	cytosol	10.19	24.72

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0010033
GO:GO:0016491	GO:GO:0046872	GO:GO:0050897	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:K4C2X8
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER	ScanProsite:PS00059	PANTHER:PTHR43350
PANTHER:PTHR43350:SF8	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc05g056540.2	EnsemblPlants:Solyc05g056540.2.1
UniParc:UPI0002765924	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:65805847..65810833

Molecular Weight (calculated)

46106.5 Da

IEP (calculated)

7.806

GRAVY (calculated)

0.067

Length

432 amino acids

Sequence
(BLAST)

001: MSFPHIIRSA IRSTSSKIAL LARSTTPFTN RSFCSSFESE KNSTAPSEAS YYHLSGGPSH MRAAVFWEPG KPLTFEDFHM PRPKANEVLI KTKACGVCHS
101: DLHVIKGELP FASPCVVGHE ITGEVVEHGQ LSDSKIIERF PVGSQVVGAF IMPCGSCSFC SKGQDDLCED FFAYNRAKGT LYDGETRLFL RNSGKPVYMY
201: SMGGLAEYCV VPAHALAVLP NSLPYTESAI LGCAVFTAYG AMAHAAEVRP GDAIAVIGIG GVGSSCLQIA RAFGASEIIA VDVQDEKLQK AKFLGATHCV
301: NASKVDAVKT IKDITGGSGV DVAVEALGRP QTFLQCVQSV RDGGKAVMIG LTLSGVKGEV DINHLVRRQI KVIGSYGARA RQDLPKLIKL AESGIFNLSA
401: AVSRTCKFED APQAYKDLDQ GTIAGRAVVE IM

Best Arabidopsis Sequence Match ( AT5G63620.1 )
(BLAST)

001: MAFAPILRRA SAVKNLFSLT RLAVGSALST RSLQTGASGD DSQSMGGYHV SPGGFMRGAV YREPNKPLTI EEFHIPRPKS NEILIKTKAC GVCHSDLHVM
101: KGEIPFASPC VIGHEITGEV VEHGPLTDHK IINRFPIGSR VVGAFIMPCG TCSYCAKGHD DLCEDFFAYN RAKGTLYDGE TRLFLRHDDS PVYMYSMGGM
201: AEYCVTPAHG LAPLPESLPY SESAILGCAV FTAYGAMAHA AEIRPGDSIA VIGIGGVGSS CLQIARAFGA SDIIAVDVQD DKLQKAKTLG ATHIVNAAKE
301: DAVERIREIT GGMGVDVAVE ALGKPQTFMQ CTLSVKDGGK AVMIGLSQAG SVGEIDINRL VRRKIKVIGS YGGRARQDLP KVVKLAESGI FNLTNAVSSK
401: YKFEDAGKAF QDLNEGKIVS RGVVEIL

Arabidopsis Description

At5g63620/MBK5_9 [Source:UniProtKB/TrEMBL;Acc:Q93ZM6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.