Factsheet for Solyc09g005250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030778	Potato	cytosol, peroxisome, plastid	98.95	98.95
Zm00001d049104_P001	Maize	cytosol, mitochondrion, plastid	38.16	76.32
KRH75891	Soybean	cytosol, peroxisome	37.63	74.09
VIT_08s0007g02230.t01	Wine grape	cytosol, mitochondrion, plastid	73.16	72.97
KRH65751	Soybean	plastid	69.47	68.75
GSMUA_Achr11P...	Banana	extracellular	18.16	68.32
AT3G51870.1	Thale cress	plastid	66.58	66.4
Bra033473.1-P	Field mustard	plastid	66.32	66.14
CDY23168	Canola	plastid	66.32	66.14
GSMUA_Achr9P03630_001	Banana	mitochondrion	65.53	66.05
KRH49367	Soybean	plastid	66.05	65.71
CDX95305	Canola	plastid	65.79	65.62
GSMUA_Achr11P...	Banana	cytosol	21.05	63.49
TraesCS3B01G211500.1	Wheat	golgi	62.89	61.44
TraesCS3D01G186300.1	Wheat	mitochondrion	62.89	60.97
TraesCS3A01G181500.1	Wheat	golgi	62.89	60.97
Os01t0265200-01	Rice	plastid	60.53	60.37
EES02734	Sorghum	mitochondrion	61.05	58.0
KRH00225	Soybean	cytosol, endoplasmic reticulum, peroxisome	47.89	57.41
Zm00001d040351_P005	Maize	mitochondrion	61.05	57.14
HORVU3Hr1G037170.3	Barley	plastid	62.89	56.37
Solyc12g008770.1.1	Tomato	extracellular	27.37	30.77
Solyc08g062860.2.1	Tomato	cytosol	27.63	30.61
Solyc10g011670.2.1	Tomato	cytosol	27.11	29.01
Solyc01g095570.2.1	Tomato	cytosol	26.84	28.73
Solyc08g082020.2.1	Tomato	cytosol	26.58	28.29
Solyc09g011360.2.1	Tomato	cytosol, peroxisome, plastid	25.53	27.32
Solyc12g099630.1.1	Tomato	cytosol	16.84	27.23
Solyc01g067070.2.1	Tomato	cytosol	22.37	25.68
Solyc03g123990.2.1	Tomato	cytosol	22.37	23.16
Solyc08g061090.2.1	Tomato	plastid	23.95	22.86
Solyc04g074130.2.1	Tomato	cytosol	25.79	22.63
Solyc05g051560.2.1	Tomato	nucleus	25.26	22.59
Solyc04g056260.1.1	Tomato	cytosol, nucleus	23.68	21.13
Solyc06g068720.2.1	Tomato	cytosol	24.47	18.6
Solyc03g118090.2.1	Tomato	cytosol	23.42	17.73

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005347
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006810	GO:GO:0006839	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579
GO:GO:0009605	GO:GO:0009607	GO:GO:0009624	GO:GO:0009941	GO:GO:0015867	GO:GO:0016020
GO:GO:0016021	GO:GO:0042651	GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395	UniProt:K4CQ15
InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PFscan:PS50920
PANTHER:PTHR24089	PANTHER:PTHR24089:SF619	SUPFAM:SSF103506	EnsemblPlantsGene:Solyc09g005250.2	EnsemblPlants:Solyc09g005250.2.1	TMHMM:TMhelix
UniParc:UPI000276AF22	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:-:183245..189258

Molecular Weight (calculated)

41713.1 Da

IEP (calculated)

9.756

GRAVY (calculated)

0.036

Length

380 amino acids

Sequence
(BLAST)

001: MRKNRPVLVS MDIPALELSN TSIQSYPSQQ WKNKFVGSAS FSKEIGCNFG CISLSENLDE KAFKGFHPTT TQLLKHPLAM VALIPREAAL FAAGAIAGAA
101: AKSVTAPLDR IKLLMQTHGL RAGQEAAKKG IGFIEAFALI GKEEGIKGYW KGNLPQVIRI IPYSAVQLFA YETYKKLFQG KDGELSVIGR LAAGACAGMT
201: STFVTYPLDV LRLRLAVDPG YKTMSEVALN MLKEEGFASF YNGLGPSLIG IAPYIAVNFC VFDLVKKALP EEYQKRTEAT LATGLISATI ATLLCYPLDT
301: VRRQMQMKGT PYMTIFDAFP GIVARDGIVG LYRGFVPNAL KTLPNSSIRL TTFDTVKRLL ARSEEEFQKI IEENRRQKAE

Best Arabidopsis Sequence Match ( AT3G51870.1 )
(BLAST)

001: MEEDRAILTF HRIPSLNSSL ITTSSPAKSG AEQFRRRVLR NPARGDFGLG RFACISLVEK CEQREFAPTT AQLLNNPLAI LALVPKDAAI FAAGALAGAA
101: AKTVTAPLDR IKLLMQTHGI RLGQQSAKKA IGFIEAITLI AKEEGVKGYW KGNLPQVIRV LPYSAVQLLA YESYKNLFKG KDDQLSVIGR LAAGACAGMT
201: STLLTYPLDV LRLRLAVEPG YRTMSQVALS MLRDEGIASF YYGLGPSLVG IAPYIAVNFC IFDLVKKSLP EEYRKKAQSS LLTAVLSAGI ATLTCYPLDT
301: VRRQMQMRGT PYKSIPEAFA GIIDRDGLIG LYRGFLPNAL KTLPNSSIRL TTFDMVKRLI ATSEKQLQKI SDDNRNRDQA Q

Arabidopsis Description

EAACProbable envelope ADP,ATP carrier protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65023]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.