Factsheet for VIT_08s0007g02230.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049104_P001	Maize	cytosol, mitochondrion, plastid	39.9	80.0
KRH75891	Soybean	cytosol, peroxisome	40.42	79.79
PGSC0003DMT400030778	Potato	cytosol, peroxisome, plastid	73.49	73.68
KRH65751	Soybean	plastid	74.02	73.44
Solyc09g005250.2.1	Tomato	plastid	72.97	73.16
GSMUA_Achr11P...	Banana	extracellular	18.64	70.3
GSMUA_Achr9P03630_001	Banana	mitochondrion	69.55	70.29
KRH49367	Soybean	plastid	68.5	68.32
GSMUA_Achr11P...	Banana	cytosol	22.31	67.46
AT3G51870.1	Thale cress	plastid	65.88	65.88
Bra033473.1-P	Field mustard	plastid	65.35	65.35
CDY23168	Canola	plastid	65.35	65.35
CDX95305	Canola	plastid	65.09	65.09
Os01t0265200-01	Rice	plastid	64.57	64.57
TraesCS3B01G211500.1	Wheat	golgi	64.57	63.24
TraesCS3D01G186300.1	Wheat	mitochondrion	64.57	62.76
TraesCS3A01G181500.1	Wheat	golgi	64.3	62.5
Zm00001d040351_P005	Maize	mitochondrion	64.83	60.84
EES02734	Sorghum	mitochondrion	63.78	60.75
KRH00225	Soybean	cytosol, endoplasmic reticulum, peroxisome	48.56	58.36
HORVU3Hr1G037170.3	Barley	plastid	64.83	58.25
VIT_15s0046g01290.t01	Wine grape	cytosol	27.3	29.38
VIT_02s0025g01180.t01	Wine grape	cytosol	27.3	29.38
VIT_04s0008g01060.t01	Wine grape	cytosol	26.51	29.36
VIT_11s0016g02470.t01	Wine grape	cytosol	25.72	28.74
VIT_08s0007g01280.t01	Wine grape	cytosol	24.93	28.27
VIT_13s0019g02440.t01	Wine grape	cytosol	25.98	27.42
VIT_05s0020g01380.t01	Wine grape	cytosol	23.1	26.67
VIT_04s0008g05240.t01	Wine grape	cytosol	27.03	25.94
VIT_11s0016g05110.t01	Wine grape	cytosol	24.93	23.75
VIT_09s0054g00790.t01	Wine grape	cytosol	21.78	23.31
VIT_18s0001g05620.t01	Wine grape	cytosol	25.46	21.9
VIT_00s0665g00020.t01	Wine grape	plastid	23.1	21.31
VIT_10s0042g01030.t01	Wine grape	cytosol	6.56	20.33
VIT_14s0068g00890.t01	Wine grape	cytosol	23.62	18.4
VIT_17s0000g00030.t01	Wine grape	plastid	24.93	17.34

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100245861	wikigene:100245861	MapMan:24.2.13	ProteinID:CCB55496	ProteinID:CCB55496.1
UniProt:F6HKS6	EMBL:FN595991	GO:GO:0003674	GO:GO:0005215	GO:GO:0005347	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810
GO:GO:0006839	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009605
GO:GO:0009607	GO:GO:0009624	GO:GO:0009941	GO:GO:0015867	GO:GO:0016020	GO:GO:0016021
GO:GO:0042651	GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395	EntrezGene:LOC100245861	wikigene:LOC100245861
InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PFscan:PS50920
PANTHER:PTHR24089	PANTHER:PTHR24089:SF619	SUPFAM:SSF103506	TIGR:TC55973	UniParc:UPI00015C9AD9	ArrayExpress:VIT_08s0007g02230
EnsemblPlantsGene:VIT_08s0007g02230	EnsemblPlants:VIT_08s0007g02230.t01	unigene:Vvi.25009	RefSeq:XP_002274764	RefSeq:XP_002274764.1	SEG:seg

Description

No Description!

Coordinates

chr8:-:16253583..16259661

Molecular Weight (calculated)

41523.9 Da

IEP (calculated)

10.093

GRAVY (calculated)

0.016

Length

381 amino acids

Sequence
(BLAST)

001: MREEKGVLVW RSIPGLEASN TGLVGSPVPQ LQWRKNGFSG ISCNFASVSV LDKGFQNELP PTSTPTAAQL FKHPLALVAL VPKDISLFTA GAVAGAAAKS
101: VTAPLDRIKL LMQTHGLRVG EESAKKAIGF IEAITLIGKE EGLKGYWKGN LPQVIRIIPY SAVQLFAYET YKKLFRGKDG ELSVIGRLAA GACAGMTSTF
201: VTYPLDVLRL RLAVEPGHQT MSEVALNILR EEGVASFYKG LGPSLLGIAP YIAVNFCVFD LVKKSLPEKY QKRTETSLLT GLVSATIATV MCYPLDTVRR
301: QMQMKGAPYK TVLDAIPGIV ERDGFIGLYR GFVPNALKTL PNSSIRLTTF DSVKRLIAAG EKEFQRIVEE NSKKQNQKES R

Best Arabidopsis Sequence Match ( AT5G01500.1 )
(BLAST)

001: MGEEKSLLQF RSFPSLKTSD FALTEEPSWR LENNVSSNRR RGNKRSGGVF TNFASLSVAI RRDRRESTFN GRNGGGGGAF ASVSVVIPKE EDEFAPTSAQ
101: LLKNPIALLS IVPKDAALFF AGAFAGAAAK SVTAPLDRIK LLMQTHGVRA GQQSAKKAIG FIEAITLIGK EEGIKGYWKG NLPQVIRIVP YSAVQLFAYE
201: TYKKLFRGKD GQLSVLGRLG AGACAGMTST LITYPLDVLR LRLAVEPGYR TMSQVALNML REEGVASFYN GLGPSLLSIA PYIAINFCVF DLVKKSLPEK
301: YQQKTQSSLL TAVVAAAIAT GTCYPLDTIR RQMQLKGTPY KSVLDAFSGI IAREGVVGLY RGFVPNALKS MPNSSIKLTT FDIVKKLIAA SEKEIQRIAD
401: DNRKKASPNT IDEQT

Arabidopsis Description

TAACThylakoid ADP,ATP carrier protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M024]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.