Factsheet for VIT_17s0000g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	76.82	81.91
PGSC0003DMT400074454	Potato	plastid	26.64	81.56
GSMUA_Achr8P26070_001	Banana	cytosol	75.36	80.19
VIT_14s0068g00890.t01	Wine grape	cytosol	71.35	79.96
KRH63894	Soybean	cytosol	67.7	79.27
Solyc06g068720.2.1	Tomato	cytosol	71.9	78.8
KRH54061	Soybean	cytosol	67.88	78.15
KRH59718	Soybean	cytosol	71.17	78.0
KRH41046	Soybean	cytosol	69.89	77.85
GSMUA_Achr5P05990_001	Banana	cytosol	72.99	77.82
PGSC0003DMT400036927	Potato	cytosol	68.61	76.89
AT5G51050.1	Thale cress	cytosol	68.8	75.7
Solyc03g118090.2.1	Tomato	cytosol	69.16	75.5
CDY14050	Canola	cytosol	63.5	74.36
Bra035722.1-P	Field mustard	cytosol	67.52	74.15
CDY05832	Canola	cytosol	67.52	74.0
CDX71683	Canola	cytosol	67.15	73.6
CDY55175	Canola	cytosol	62.77	73.5
Bra028702.1-P	Field mustard	cytosol	62.77	73.5
CDX70028	Canola	cytosol	52.37	72.29
AT5G07320.1	Thale cress	cytosol	63.14	72.23
Os06t0604500-01	Rice	nucleus	67.34	71.65
EER88619	Sorghum	cytosol, plastid	67.7	71.62
Bra009271.1-P	Field mustard	cytosol	56.2	71.46
TraesCS7B01G278000.1	Wheat	cytosol, plastid	66.79	71.07
TraesCS7A01G376600.1	Wheat	cytosol, plastid	66.79	70.38
TraesCS7D01G372900.1	Wheat	cytosol, plastid	66.61	70.33
HORVU7Hr1G090020.9	Barley	mitochondrion	66.61	69.79
AT5G61810.1	Thale cress	cytosol	60.77	69.67
Bra019615.1-P	Field mustard	cytosol	60.58	69.6
CDY00231	Canola	cytosol	60.58	69.6
CDX86953	Canola	cytosol	60.4	69.39
KXG29744	Sorghum	plastid	65.88	68.37
CDX98981	Canola	endoplasmic reticulum, golgi	52.19	67.14
Zm00001d053640_P001	Maize	plasma membrane	64.78	67.11
Zm00001d046509_P002	Maize	plastid	66.79	66.3
Os02t0201500-00	Rice	plastid	66.24	62.59
VIT_02s0025g01180.t01	Wine grape	cytosol	24.27	37.57
VIT_15s0046g01290.t01	Wine grape	cytosol	23.72	36.72
VIT_08s0007g01280.t01	Wine grape	cytosol	19.89	32.44
VIT_13s0019g02440.t01	Wine grape	cytosol	20.99	31.86
VIT_11s0016g02470.t01	Wine grape	cytosol	18.98	30.5
VIT_04s0008g01060.t01	Wine grape	cytosol	18.07	28.78
VIT_04s0008g05240.t01	Wine grape	cytosol	20.44	28.21
VIT_05s0020g01380.t01	Wine grape	cytosol	16.61	27.58
VIT_11s0016g05110.t01	Wine grape	cytosol	20.07	27.5
VIT_08s0007g02230.t01	Wine grape	cytosol, mitochondrion, plastid	17.34	24.93
VIT_10s0042g01030.t01	Wine grape	cytosol	5.47	24.39
VIT_09s0054g00790.t01	Wine grape	cytosol	14.96	23.03
VIT_00s0665g00020.t01	Wine grape	plastid	16.97	22.52
VIT_18s0001g05620.t01	Wine grape	cytosol	17.52	21.67

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.50.40.10	EntrezGene:100249302	wikigene:100249302	MapMan:24.2.13	EMBL:AM456511
ProteinID:CAN83157	ProteinID:CAN83157.1	ProteinID:CCB43371	ProteinID:CCB43371.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	UniProt:F6GT50	EMBL:FN594950	GO:GO:0003674	GO:GO:0005215	GO:GO:0005347
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0006839	GO:GO:0008150	GO:GO:0015217
GO:GO:0015866	GO:GO:0015867	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR002048
InterPro:IPR018108	InterPro:IPR023395	EntrezGene:LOC100249302	wikigene:LOC100249302	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier
InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PFAM:PF13202	PFAM:PF13499	PRINTS:PR00926	ScanProsite:PS00018
PFscan:PS50222	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF454	SMART:SM00054	SUPFAM:SSF103506
SUPFAM:SSF47473	UniParc:UPI000210A5E4	ArrayExpress:VIT_17s0000g00030	EnsemblPlantsGene:VIT_17s0000g00030	EnsemblPlants:VIT_17s0000g00030.t01	unigene:Vvi.20947
RefSeq:XP_002284731	RefSeq:XP_002284731.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:+:23971..30566

Molecular Weight (calculated)

60732.8 Da

IEP (calculated)

6.269

GRAVY (calculated)

-0.208

Length

548 amino acids

Sequence
(BLAST)

001: MAPSLLSISQ SLLYPGIAPQ PRSGNLDRPH EDFGVGRMSG AGQAVERVGF GKMEKRRASS DSESETGCCN PVRKGGPVGM DHVLLALQES KEERDVRIRS
101: LFNFFDSANL GYLDYAQIEG GLSALQIPPE YKYAKDLLKV CDSNSDGRVD YQEFRRYMDD KELELYRIFQ AIDVKHNGCI LPEELWDALL KAGIEIDDEE
201: LARFVENVDK DNNGIITFEE WRDFLLLYPH EATIENIYQY WGRVCLVDIG EQAVIPEGIS KHVHASKYLL AGGVAGAASR TATAPLDRLK VVLQVQTTHA
301: RIVPAIKNIW KEGGLLGFFR GNGLNVVKVA PESAIKFYTY EMFKNVVRDA KGEAKDDIGA AGRLFAGGMA GAVAQTAIYP LDLVKTRLQT YTCEGGKVPY
401: LKTLARNIWF QEGPQGFYRG LVPSVLGIIP YAGIDLAAYE TLKDMSKTYL LHDSEPGPLV QLGSGTISGA LGATCVYPLQ VIRTRMQAQR TNTDASYNGM
501: SDVFRRTLQH EGFRGFYKGL FPNLLKVVPS ASITYLVYET MKKSLDLD

Best Arabidopsis Sequence Match ( AT5G51050.1 )
(BLAST)

001: MSTTHVGLPT KMEATKSSKQ NCCNPVKKPG PVSIDHVLLA LRETREERDL RIRSLFSFFD SENVGYLDCA QIEKGLCALQ IPSGYKYAKE LFRVCDANRD
101: GRVDYHEFRR YMDDKELELY RIFQAIDVEH NGCISPEGLW DSLVKAGIEI KDEELARFVE HVDKDNDGII MFEEWRDFLL LYPHEATIEN IYHHWERVCL
201: VDIGEQAVIP EGISKHIKRS NYFIAGGIAG AASRTATAPL DRLKVLLQIQ KTDARIREAI KLIWKQGGVR GFFRGNGLNI VKVAPESAIK FYAYELFKNA
301: IGENMGEDKA DIGTTVRLFA GGMAGAVAQA SIYPLDLVKT RLQTYTSQAG VAVPRLGTLT KDILVHEGPR AFYKGLFPSL LGIIPYAGID LAAYETLKDL
401: SRTYILQDAE PGPLVQLGCG TISGALGATC VYPLQVVRTR MQAERARTSM SGVFRRTISE EGYRALYKGL LPNLLKVVPA ASITYMVYEA MKKSLELD

Arabidopsis Description

Mitochondrial substrate carrier family protein [Source:TAIR;Acc:AT5G51050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.