Factsheet for VIT_11s0016g05110.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03708	Soybean	cytosol, mitochondrion, nucleus, plastid	75.25	73.59
TraesCS7A01G495700.1	Wheat	cytosol, plastid	37.5	71.09
VIT_04s0008g05240.t01	Wine grape	cytosol	70.0	70.53
GSMUA_Achr7P10070_001	Banana	cytosol	66.25	68.65
GSMUA_Achr7P10000_001	Banana	mitochondrion	38.0	65.24
GSMUA_Achr6P05150_001	Banana	cytosol, plastid, vacuole	64.75	64.43
Zm00001d009799_P001	Maize	plastid	64.5	63.55
Zm00001d037640_P001	Maize	plastid	63.5	62.56
Os05t0171300-01	Rice	mitochondrion, plastid	64.5	62.17
TraesCS1B01G135400.1	Wheat	cytosol	63.25	61.41
TraesCS1A01G115500.1	Wheat	golgi	63.25	61.26
TraesCS1D01G116900.1	Wheat	cytosol	63.5	61.2
EES17800	Sorghum	cytosol	64.0	61.1
HORVU1Hr1G025480.1	Barley	nucleus, peroxisome, vacuole	62.75	60.77
EER90006	Sorghum	plastid	61.5	58.43
Os06t0602700-01	Rice	plastid	61.75	58.39
HORVU7Hr1G111040.2	Barley	cytosol	61.25	58.06
Zm00001d046400_P002	Maize	mitochondrion	60.5	57.62
TraesCS7B01G401600.1	Wheat	cytosol	60.75	57.31
TraesCS7D01G483000.1	Wheat	cytosol	60.5	57.21
GSMUA_Achr10P...	Banana	endoplasmic reticulum	58.75	52.57
TraesCS6B01G210000.1	Wheat	plastid	55.75	51.98
Os02t0202400-01	Rice	plastid	55.0	51.76
TraesCS6A01G175100.1	Wheat	plastid	55.75	51.5
TraesCS6D01G168200.1	Wheat	golgi	54.75	51.05
EES04720	Sorghum	plastid	54.75	50.34
Zm00001d015746_P001	Maize	plastid	54.5	49.89
VIT_09s0054g00790.t01	Wine grape	cytosol	30.5	34.27
VIT_10s0042g01030.t01	Wine grape	cytosol	9.25	30.08
VIT_15s0046g01290.t01	Wine grape	cytosol	26.25	29.66
VIT_02s0025g01180.t01	Wine grape	cytosol	26.25	29.66
VIT_05s0020g01380.t01	Wine grape	cytosol	24.0	29.09
VIT_04s0008g01060.t01	Wine grape	cytosol	24.75	28.78
VIT_08s0007g01280.t01	Wine grape	cytosol	23.25	27.68
VIT_11s0016g02470.t01	Wine grape	cytosol	22.75	26.69
VIT_18s0001g05620.t01	Wine grape	cytosol	29.5	26.64
VIT_13s0019g02440.t01	Wine grape	cytosol	23.75	26.32
VIT_00s0665g00020.t01	Wine grape	plastid	27.0	26.15
VIT_08s0007g02230.t01	Wine grape	cytosol, mitochondrion, plastid	23.75	24.93
VIT_14s0068g00890.t01	Wine grape	cytosol	26.25	21.47
VIT_17s0000g00030.t01	Wine grape	plastid	27.5	20.07

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100266320	wikigene:100266320	MapMan:24.2.13	UniProt:A5APG4	EMBL:AM431459
ProteinID:CAN60465	ProteinID:CAN60465.1	ProteinID:CCB51576	ProteinID:CCB51576.1	EMBL:FN595756	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006810	GO:GO:0006839	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395	EntrezGene:LOC100266320	wikigene:LOC100266320
InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PFscan:PS50920
PANTHER:PTHR24089	PANTHER:PTHR24089:SF182	SUPFAM:SSF103506	TIGR:TC54910	UniParc:UPI000151F43E	ArrayExpress:VIT_11s0016g05110
EnsemblPlantsGene:VIT_11s0016g05110	EnsemblPlants:VIT_11s0016g05110.t01	unigene:Vvi.19404	RefSeq:XP_002281941	RefSeq:XP_002281941.1	SEG:seg

Description

No Description!

Coordinates

chr11:-:4386401..4390523

Molecular Weight (calculated)

43239.7 Da

IEP (calculated)

9.814

GRAVY (calculated)

-0.102

Length

400 amino acids

Sequence
(BLAST)

001: MGGRGLQGVE RNGDVLFSTS GLGFQWSPQE NCFHPGGLFA SVGQAGMGFG ISPNSHDNGS KPPFANMYTK YALVQESGYK IVEVPELGVG EIAEEEIVKK
101: KKKKKRGAVK LKIKIGNPSL RRLISGAIAG GVSRTAVAPL ETIRTHLMVG SCGNSTGEVF QNIMKNDGWK GLFRGNFVNV IRVAPSKAIE LFAYDTVKKH
201: LTPNPGEQPK LPFPASPIAG AIAGVSSTLC MYPLELLKTR LTVQRGVYKN LLDAFLTIMR DEGPAELYRG LTPSLIGVIP YAATNYFAYD TLRRSYKKAF
301: NQEEIGNMMT LLIGSAAGAI SSSATFPLEV ARKHMQAGAL NGRQYQNVLH ALASILETEG LPGLYRGLGP SCMKLVPAAG ISFMCYEACK RILIEKEDDR

Best Arabidopsis Sequence Match ( AT4G32400.1 )
(BLAST)

001: MGKTGIQLFD DSRNGFFSVS DLGFDSSLNS SNYHPIGGLF ASVNQTNPFA SLSSSDLSNR GNNSFSTQLN DLYTKYMPGK EEEEEVVNGE KRKRKKKGGL
101: TLKIKIANPS LRRLLSGAVA GAVSRTVVAP LETIRTHLMV GSGGNSSTEV FSDIMKHEGW TGLFRGNLVN VIRVAPARAV ELFVFETVNK KLSPPHGQES
201: KIPIPASLLA GACAGVSQTL LTYPLELVKT RLTIQRGVYK GIFDAFLKII REEGPTELYR GLAPSLIGVV PYAATNYFAY DSLRKAYRSF SKQEKIGNIE
301: TLLIGSLAGA LSSTATFPLE VARKHMQVGA VSGRVVYKNM LHALVTILEH EGILGWYKGL GPSCLKLVPA AGISFMCYEA CKKILIENNQ EA

Arabidopsis Description

BT1SHS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UW29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.