CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015746_P001	Maize	plastid	90.57	90.16
Os02t0202400-01	Rice	plastid	71.26	72.94
TraesCS6B01G210000.1	Wheat	plastid	68.97	69.93
TraesCS6A01G175100.1	Wheat	plastid	68.51	68.82
TraesCS6D01G168200.1	Wheat	golgi	67.59	68.53
KRH15889	Soybean	endoplasmic reticulum	34.71	63.18
GSMUA_Achr7P10070_001	Banana	cytosol	53.56	60.36
EER90006	Sorghum	plastid	56.78	58.67
CDX68843	Canola	cytosol	17.47	58.02
GSMUA_Achr6P05150_001	Banana	cytosol, plastid, vacuole	52.64	56.97
GSMUA_Achr7P10000_001	Banana	mitochondrion	29.89	55.79
VIT_04s0008g05240.t01	Wine grape	cytosol	50.34	55.16
VIT_11s0016g05110.t01	Wine grape	cytosol	50.34	54.75
PGSC0003DMT400053564	Potato	cytosol, nucleus, plastid	49.89	54.52
CDX75241	Canola	cytoskeleton, cytosol, nucleus	47.59	54.19
CDX68841	Canola	cytosol	46.9	54.11
Solyc08g061090.2.1	Tomato	plastid	49.43	54.02
Bra011344.1-P	Field mustard	cytosol	47.36	53.93
EES17800	Sorghum	cytosol	51.49	53.46
KRH61786	Soybean	cytosol, nucleus, plastid	48.05	53.45
KRH52458	Soybean	extracellular	47.82	53.2
CDX76755	Canola	cytosol	48.51	53.15
Bra007793.1-P	Field mustard	cytosol	48.51	53.02
CDY11524	Canola	cytosol	48.51	53.02
KRH03708	Soybean	cytosol, mitochondrion, nucleus, plastid	48.51	51.59
AT4G32400.1	Thale cress	cytosol	46.44	51.53
KRH05133	Soybean	mitochondrion	47.82	49.76
GSMUA_Achr10P...	Banana	endoplasmic reticulum	50.57	49.22
EER97679	Sorghum	cytosol	29.66	35.15
EER96987	Sorghum	cytosol	30.11	34.93
EES15354	Sorghum	cytosol	28.28	32.2
EES20024	Sorghum	cytosol	24.6	30.14
EES00336	Sorghum	cytosol	21.61	28.48
KXG29836	Sorghum	cytosol, mitochondrion, plastid	21.84	28.27
EES00940	Sorghum	plastid	21.61	27.65
EES01355	Sorghum	extracellular	21.15	27.38
KXG34072	Sorghum	cytosol	20.92	26.53
OQU92863	Sorghum	cytosol	20.92	26.3
KXG39987	Sorghum	peroxisome	25.52	25.87
EES02734	Sorghum	mitochondrion	19.54	21.25
EER88619	Sorghum	cytosol, plastid	24.6	20.66
KXG29744	Sorghum	plastid	24.83	20.45
OQU92679	Sorghum	cytosol	5.29	18.55

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	EntrezGene:8082924	UniProt:C5XXW5	ncoils:Coil	EnsemblPlants:EES04720
ProteinID:EES04720	ProteinID:EES04720.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0006839
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR018108
InterPro:IPR023395	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926
PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF281	EnsemblPlantsGene:SORBI_3004G085100	SUPFAM:SSF103506	TMHMM:TMhelix
UniParc:UPI0001A857CA	RefSeq:XP_002451744.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:7084757..7086819

Molecular Weight (calculated)

46837.0 Da

IEP (calculated)

9.683

GRAVY (calculated)

-0.156

Length

435 amino acids

Sequence
(BLAST)

001: MAATMAVTTM VTRSKESWSL QVPTVSLPWK PRCGKNALEF PRRAMFASVG LNVCPGVPSG RDPREPDPKA PRPADNCDIA RQLGAAVPGQ QQQAAGEVAE
101: EEAAKKKKKG GGKKRQLGDL RKVRVKIANP HLRRLVSGAI AGAVSRTFVA PLETIRTHLM VGSIGVDSMV GVFQWIMQNE GWTGLFRGNA VNVLRVAPSK
201: AIEHFTYDTA KKFLTPKGDE PPKIPIPTPL VAGALAGFAS TLCTYPMELI KTRITIEKDA YENVAHAFVK IVRDEGASEL YRGLAPSLIG VVPYAACNFY
301: AYETLKRLYR RATGRRPGAD VGAVATLLIG SAAGAIASTA TFPLEVARKQ MQVGAVGGRQ VYQNVLHAIY CILKKEGAAG LYRGLGPSCI KLMPAAGIAF
401: MCYEACKKIL VDKEEDEEEE EEEAGAGDEG KKKLE

Best Arabidopsis Sequence Match ( AT4G32400.1 )
(BLAST)

001: MGKTGIQLFD DSRNGFFSVS DLGFDSSLNS SNYHPIGGLF ASVNQTNPFA SLSSSDLSNR GNNSFSTQLN DLYTKYMPGK EEEEEVVNGE KRKRKKKGGL
101: TLKIKIANPS LRRLLSGAVA GAVSRTVVAP LETIRTHLMV GSGGNSSTEV FSDIMKHEGW TGLFRGNLVN VIRVAPARAV ELFVFETVNK KLSPPHGQES
201: KIPIPASLLA GACAGVSQTL LTYPLELVKT RLTIQRGVYK GIFDAFLKII REEGPTELYR GLAPSLIGVV PYAATNYFAY DSLRKAYRSF SKQEKIGNIE
301: TLLIGSLAGA LSSTATFPLE VARKHMQVGA VSGRVVYKNM LHALVTILEH EGILGWYKGL GPSCLKLVPA AGISFMCYEA CKKILIENNQ EA

Arabidopsis Description

BT1SHS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UW29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.