Factsheet for PGSC0003DMT400053564

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g061090.2.1	Tomato	plastid	97.49	97.49
KRH15889	Soybean	endoplasmic reticulum	49.5	82.43
VIT_04s0008g05240.t01	Wine grape	cytosol	77.39	77.58
TraesCS7A01G495700.1	Wheat	cytosol, plastid	38.19	72.04
CDX68843	Canola	cytosol	23.62	71.76
KRH61786	Soybean	cytosol, nucleus, plastid	69.6	70.84
CDX68841	Canola	cytosol	67.09	70.82
KRH52458	Soybean	extracellular	68.84	70.08
CDX76755	Canola	cytosol	69.85	70.03
CDX75241	Canola	cytoskeleton, cytosol, nucleus	67.09	69.9
AT4G32400.1	Thale cress	cytosol	68.59	69.64
Bra011344.1-P	Field mustard	cytosol	66.83	69.63
Bra007793.1-P	Field mustard	cytosol	69.6	69.6
CDY11524	Canola	cytosol	69.6	69.6
GSMUA_Achr7P10070_001	Banana	cytosol	66.08	68.13
KRH05133	Soybean	mitochondrion	69.35	66.03
GSMUA_Achr6P05150_001	Banana	cytosol, plastid, vacuole	66.08	65.42
GSMUA_Achr7P10000_001	Banana	mitochondrion	37.69	64.38
Zm00001d009799_P001	Maize	plastid	65.58	64.29
Zm00001d037640_P001	Maize	plastid	64.57	63.3
TraesCS1A01G115500.1	Wheat	golgi	64.82	62.47
Os05t0171300-01	Rice	mitochondrion, plastid	64.32	61.69
TraesCS1D01G116900.1	Wheat	cytosol	64.32	61.69
TraesCS1B01G135400.1	Wheat	cytosol	63.82	61.65
EES17800	Sorghum	cytosol	64.82	61.58
HORVU1Hr1G025480.1	Barley	nucleus, peroxisome, vacuole	63.82	61.5
Os06t0602700-01	Rice	plastid	63.82	60.05
TraesCS7D01G483000.1	Wheat	cytosol	63.82	60.05
TraesCS7B01G401600.1	Wheat	cytosol	63.82	59.91
EER90006	Sorghum	plastid	63.32	59.86
HORVU7Hr1G111040.2	Barley	cytosol	63.32	59.72
Zm00001d046400_P002	Maize	mitochondrion	62.81	59.52
TraesCS6B01G210000.1	Wheat	plastid	56.78	52.68
GSMUA_Achr10P...	Banana	endoplasmic reticulum	58.79	52.35
TraesCS6A01G175100.1	Wheat	plastid	56.78	52.19
TraesCS6D01G168200.1	Wheat	golgi	56.03	51.98
Os02t0202400-01	Rice	plastid	55.03	51.53
EES04720	Sorghum	plastid	54.52	49.89
Zm00001d015746_P001	Maize	plastid	54.27	49.43
PGSC0003DMT400074454	Potato	plastid	15.83	35.2
PGSC0003DMT400023766	Potato	cytosol	30.4	34.18
PGSC0003DMT400049872	Potato	cytosol	28.64	32.11
PGSC0003DMT400000597	Potato	cytosol	27.64	30.99
PGSC0003DMT400000910	Potato	cytosol	26.13	30.41
PGSC0003DMT400004751	Potato	mitochondrion	11.56	28.75
PGSC0003DMT400021172	Potato	plastid	23.87	28.27
PGSC0003DMT400087691	Potato	mitochondrion	11.56	27.54
PGSC0003DMT400043297	Potato	cytosol, plastid	28.64	27.08
PGSC0003DMT400062351	Potato	cytosol	23.37	26.42
PGSC0003DMT400016387	Potato	cytosol	28.39	26.1
PGSC0003DMT400030778	Potato	cytosol, peroxisome, plastid	23.62	24.74
PGSC0003DMT400036927	Potato	cytosol	27.89	22.7

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:102589171	MapMan:24.2.13	ProteinID:ABA81858	ProteinID:ABA81858.1	ProteinID:CAA67107
ProteinID:CAA67107.1	EMBL:DQ207850	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier
InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	RefSeq:NP_001275457.1	PFAM:PF00153	EnsemblPlantsGene:PGSC0003DMG400020780	PGSC:PGSC0003DMG400020780
EnsemblPlants:PGSC0003DMT400053564	PRINTS:PR00926	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF182	UniProt:Q38M74
SUPFAM:SSF103506	UniParc:UPI00005CA25F	EMBL:X98474	SEG:seg	:	:

Description

Brittle 1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020780]

Coordinates

chr8:+:32228795..32232705

Molecular Weight (calculated)

42760.0 Da

IEP (calculated)

9.570

GRAVY (calculated)

0.008

Length

398 amino acids

Sequence
(BLAST)

001: MARRDIQALE CKKDGSMSIS HLGLQWSLQD SNFCPGGLFA SVGQMGSMGF GVSSPNPSDS RDENGGFKLP YSDLCMKYLS FSEGFKIVGN GEEEGVVKEK
101: KKKGGLKIKL KVSNPSLRRL ISGAIAGAIS RTAVAPLETI RTHLMVGSSG HSSTEVFNSI MKTEGWTGLF RGNFVNVIRV APSKAVELFV YDTVNKNLSS
201: KPGEQSKIPI PASLVAGACA GVSSTLLTYP LELVKTRLTI QRGVYNGLLD AFVKILKEGG PAELYRGLTP SVIGVIPYAA TNYFAYDSLR KAYRKIFKEE
301: KIGNIETLLI GSAAGAISST ATFPLEVARK HMQVGAVSGR AVYKNVIHAL VSILEQDGIH GLYKGLGPSC MKLVPAAGIS FMCYEACKRI LIEAENEE

Best Arabidopsis Sequence Match ( AT4G32400.1 )
(BLAST)

001: MGKTGIQLFD DSRNGFFSVS DLGFDSSLNS SNYHPIGGLF ASVNQTNPFA SLSSSDLSNR GNNSFSTQLN DLYTKYMPGK EEEEEVVNGE KRKRKKKGGL
101: TLKIKIANPS LRRLLSGAVA GAVSRTVVAP LETIRTHLMV GSGGNSSTEV FSDIMKHEGW TGLFRGNLVN VIRVAPARAV ELFVFETVNK KLSPPHGQES
201: KIPIPASLLA GACAGVSQTL LTYPLELVKT RLTIQRGVYK GIFDAFLKII REEGPTELYR GLAPSLIGVV PYAATNYFAY DSLRKAYRSF SKQEKIGNIE
301: TLLIGSLAGA LSSTATFPLE VARKHMQVGA VSGRVVYKNM LHALVTILEH EGILGWYKGL GPSCLKLVPA AGISFMCYEA CKKILIENNQ EA

Arabidopsis Description

BT1SHS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UW29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.