Factsheet for PGSC0003DMT400021172

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g062860.2.1	Tomato	cytosol	97.92	95.92
VIT_04s0008g01060.t01	Wine grape	cytosol	78.57	76.74
CDX84024	Canola	cytosol	67.26	68.69
CDX96850	Canola	cytosol	67.56	68.58
AT1G14560.1	Thale cress	cytosol	67.56	68.58
CDY45268	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	66.37	68.2
KRH61524	Soybean	cytosol	68.75	68.14
Bra016697.1-P	Field mustard	cytosol	66.96	67.98
Bra026206.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	65.77	67.58
KRH52207	Soybean	cytosol	67.56	67.16
Zm00001d011226_P002	Maize	plastid	67.86	67.06
Os01t0571000-02	Rice	cytosol, peroxisome, plastid	67.56	66.76
HORVU3Hr1G049720.4	Barley	cytosol, peroxisome, plastid	67.26	66.67
EES00940	Sorghum	plastid	67.26	66.47
TraesCS3D01G209300.1	Wheat	plastid	66.96	66.37
GSMUA_Achr8P26260_001	Banana	cytosol, peroxisome, plastid	66.67	66.27
TraesCS3A01G206300.1	Wheat	plastid	66.37	65.78
TraesCS3B01G238400.1	Wheat	cytosol, plastid, vacuole	45.83	64.98
EES01355	Sorghum	extracellular	64.29	64.29
Zm00001d011697_P001	Maize	peroxisome	63.1	63.86
Os01t0708900-01	Rice	cytosol, extracellular, peroxisome	63.69	63.5
TraesCS3B01G280800.1	Wheat	cytosol, mitochondrion, plastid	63.69	63.5
TraesCS3A01G251300.1	Wheat	cytosol, mitochondrion, plastid	63.69	63.5
TraesCS3D01G251700.1	Wheat	cytosol, mitochondrion, plastid	63.39	63.2
CDY67915	Canola	cytosol	42.26	56.35
HORVU3Hr1G066850.4	Barley	mitochondrion	56.25	54.78
PGSC0003DMT400000910	Potato	cytosol	54.46	53.51
PGSC0003DMT400074454	Potato	plastid	18.75	35.2
PGSC0003DMT400049872	Potato	cytosol	35.42	33.52
PGSC0003DMT400000597	Potato	cytosol	34.82	32.96
PGSC0003DMT400087691	Potato	mitochondrion	14.58	29.34
PGSC0003DMT400062351	Potato	cytosol	29.46	28.12
PGSC0003DMT400030778	Potato	cytosol, peroxisome, plastid	30.65	27.11
PGSC0003DMT400023766	Potato	cytosol	25.3	24.01
PGSC0003DMT400053564	Potato	cytosol, nucleus, plastid	28.27	23.87
PGSC0003DMT400004751	Potato	mitochondrion	11.31	23.75
PGSC0003DMT400043297	Potato	cytosol, plastid	28.27	22.57
PGSC0003DMT400016387	Potato	cytosol	27.08	21.02
PGSC0003DMT400036927	Potato	cytosol	28.87	19.84

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:102596907	MapMan:24.2.13	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810
GO:GO:0008150	GO:GO:0015228	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:1990559
InterPro:IPR018108	InterPro:IPR023395	UniProt:M1AEQ6	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
PFAM:PF00153	EnsemblPlantsGene:PGSC0003DMG400008200	PGSC:PGSC0003DMG400008200	EnsemblPlants:PGSC0003DMT400021172	PRINTS:PR00926	PFscan:PS50920
PANTHER:PTHR24089	PANTHER:PTHR24089:SF617	SUPFAM:SSF103506	UniParc:UPI000294E434	RefSeq:XP_015166028.1	:

Description

Grave disease carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008200]

Coordinates

chr8:+:35291159..35297614

Molecular Weight (calculated)

36871.7 Da

IEP (calculated)

9.973

GRAVY (calculated)

-0.088

Length

336 amino acids

Sequence
(BLAST)

001: MSSSTQGATL STNVVGLVDG SSASHREVSV FDGLPIYVKE LIAGGAAGAF AKTVVAPLER VKILLQTRTE GYHSLGVHQS LKKLLKNEGV IGFYKGNGAS
101: VLRIVPYAAL HYMTYERYRG WILENYSALG TGPVVDLLAG SASGGTAVLC TYPLDLARTK LAYQVKETRG NDSRPTHIRP QYSGTKNVLE AVYKEGGLRA
201: LYRGVGPTLI GILPYAGLKF YVYEELKRHV PEEHQSSIMM RLSCGAIAGL LGQTFTYPLD VVRRQMQVEH LQPSLQDRAR YRSTFDGLSS IVRNQGWRQL
301: FAGLSVNYMK IVPSVAIGFT AYDTMKAYLN VPPRQK

Best Arabidopsis Sequence Match ( AT1G14560.1 )
(BLAST)

001: MGSSQGSTLS ADVMSLVDTL PVLAKTLIAG GAAGAIAKTA VAPLERIKIL LQTRTNDFKT LGVSQSLKKV LQFDGPLGFY KGNGASVIRI IPYAALHYMT
101: YEVYRDWILE KNLPLGSGPI VDLVAGSAAG GTAVLCTYPL DLARTKLAYQ VSDTRQSLRG GANGFYRQPT YSGIKEVLAM AYKEGGPRGL YRGIGPTLIG
201: ILPYAGLKFY IYEELKRHVP EEHQNSVRMH LPCGALAGLF GQTITYPLDV VRRQMQVENL QPMTSEGNNK RYKNTFDGLN TIVRTQGWKQ LFAGLSINYI
301: KIVPSVAIGF TVYESMKSWM RIPPRERSKP A

Arabidopsis Description

COAC1Mitochondrial carrier protein CoAc1 [Source:UniProtKB/Swiss-Prot;Acc:F4HW79]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.