Factsheet for PGSC0003DMT400062351

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g011360.2.1	Tomato	cytosol, peroxisome, plastid	98.58	97.75
KRH49196	Soybean	endoplasmic reticulum	60.51	77.45
VIT_08s0007g01280.t01	Wine grape	cytosol	73.86	77.38
KRH00061	Soybean	cytosol	69.6	73.8
GSMUA_Achr8P02430_001	Banana	cytosol	70.17	70.37
Os03t0267700-01	Rice	cytosol	68.75	69.94
TraesCS4B01G211000.1	Wheat	plastid	65.62	68.96
Zm00001d047838_P001	Maize	cytosol	67.05	68.8
OQU92863	Sorghum	cytosol	67.61	68.79
TraesCS4A01G093400.1	Wheat	cytosol	65.91	67.84
HORVU4Hr1G060540.1	Barley	cytosol	65.91	67.84
TraesCS4D01G211700.2	Wheat	cytosol	65.91	67.64
CDY07764	Canola	plastid	65.06	67.35
Bra000026.1-P	Field mustard	plastid	65.06	67.35
Zm00001d039884_P002	Maize	cytosol	62.22	66.77
CDY59491	Canola	cytosol	64.2	66.47
GSMUA_Achr10P...	Banana	cytosol	63.64	66.47
AT3G53940.1	Thale cress	cytosol	68.75	66.3
Os01t0143100-01	Rice	mitochondrion	60.51	66.15
EES00336	Sorghum	cytosol	61.36	65.45
CDY18420	Canola	plastid	63.92	65.22
Bra017151.1-P	Field mustard	plastid	63.64	64.93
CDX93344	Canola	plastid	63.35	64.64
CDX76183	Canola	cytosol	64.2	64.57
CDY13155	Canola	cytosol	64.2	64.57
OQU92679	Sorghum	cytosol	22.73	64.52
Bra014855.1-P	Field mustard	cytosol	65.06	63.97
TraesCS3D01G058400.1	Wheat	cytosol, mitochondrion, peroxisome	58.52	62.61
TraesCS3B01G070700.1	Wheat	cytosol, mitochondrion, peroxisome	58.52	62.61
TraesCS3A01G058200.1	Wheat	cytosol, mitochondrion, peroxisome	58.52	62.61
AT2G37890.1	Thale cress	cytosol	59.66	62.31
GSMUA_Achr6P33950_001	Banana	plastid	68.18	60.0
HORVU3Hr1G011350.16	Barley	mitochondrion, plastid	58.81	55.65
PGSC0003DMT400074454	Potato	plastid	18.18	35.75
PGSC0003DMT400000597	Potato	cytosol	30.97	30.7
PGSC0003DMT400049872	Potato	cytosol	30.4	30.14
PGSC0003DMT400000910	Potato	cytosol	29.26	30.12
PGSC0003DMT400021172	Potato	plastid	28.12	29.46
PGSC0003DMT400030778	Potato	cytosol, peroxisome, plastid	27.84	25.79
PGSC0003DMT400087691	Potato	mitochondrion	12.22	25.75
PGSC0003DMT400004751	Potato	mitochondrion	11.65	25.62
PGSC0003DMT400053564	Potato	cytosol, nucleus, plastid	26.42	23.37
PGSC0003DMT400043297	Potato	cytosol, plastid	26.42	22.09
PGSC0003DMT400036927	Potato	cytosol	30.4	21.88
PGSC0003DMT400023766	Potato	cytosol	21.88	21.75
PGSC0003DMT400016387	Potato	cytosol	26.14	21.25

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:102591065	MapMan:24.2.13	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395	UniProt:M1C8Y3
InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	EnsemblPlantsGene:PGSC0003DMG400024266	PGSC:PGSC0003DMG400024266
EnsemblPlants:PGSC0003DMT400062351	PRINTS:PR00926	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF403	SUPFAM:SSF103506
UniParc:UPI000295C813	RefSeq:XP_006340987.1	SEG:seg	:	:	:

Description

Mitochondrial carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024266]

Coordinates

chr9:+:1211100..1214913

Molecular Weight (calculated)

38473.6 Da

IEP (calculated)

10.093

GRAVY (calculated)

-0.065

Length

352 amino acids

Sequence
(BLAST)

001: MEARVGVSGH GGGVVEGGAR KFLQQPQQNH LQQNHHYHTQ QQQQQPQPQP QIGTVPQLLA GGIAGAFSKT CTAPLARLTI LFQVQGMHSD IAVLTKPSIC
101: REALRIVNEE GFRAFWKGNL VTIAHRLPYS SVNFYAYERY KSILKSIPGL DGKGRNAGAD IFVHFVGGGL AGITAAAVTY PLDLVRTRLA AQRNTIYYQG
201: ICHSLRTICR DEGFFGLYKG LGATLLGVGP SIAISFSVYE ALRSYWQVQR PDDPTIAVSL ACGSLSGIAS STATFPLDLV RRRKQLEGAG GRARVYNTGI
301: MGIFKHIIRT EGLRGLYRGI MPEYYKVVPS VGIVFMTYET LKKLLSQGPF DS

Best Arabidopsis Sequence Match ( AT3G53940.1 )
(BLAST)

001: MEARVGVVVE GGQRALNTAT TTAVHNTVVD AGNRKLLQQQ PQTQQTQSCH QHHQSNKQSL NQQQGHFGTV ERLLAGGIAG AFSKTCTAPL ARLTILFQIQ
101: GMQSEAAILS SPNIWHEASR IVKEEGFRAF WKGNLVTVAH RLPYGAVNFY AYEEYKTFLH SNPVLQSYKG NAGVDISVHF VSGGLAGLTA ASATYPLDLV
201: RTRLSAQRNS IYYQGVGHAF RTICREEGIL GLYKGLGATL LGVGPSLAIS FAAYETFKTF WLSHRPNDSN AVVSLGCGSL SGIVSSTATF PLDLVRRRMQ
301: LEGAGGRARV YTTGLFGTFK HIFKTEGMRG LYRGIIPEYY KVVPGVGIAF MTFEELKKLL STVPN

Arabidopsis Description

Mitochondrial substrate carrier family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4M2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.