Factsheet for PGSC0003DMT400000910

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g008770.1.1	Tomato	extracellular	95.91	97.04
VIT_11s0016g02470.t01	Wine grape	cytosol	75.15	75.37
KRH49045	Soybean	cytosol	69.01	73.06
AT4G26180.1	Thale cress	cytosol	69.01	71.3
Bra026457.1-P	Field mustard	cytosol	69.59	71.26
CDX94361	Canola	cytosol	69.59	71.26
CDY68466	Canola	cytosol	69.3	71.17
TraesCS6D01G176300.3	Wheat	cytosol	67.25	68.66
TraesCS6B01G231800.3	Wheat	cytosol	67.25	68.66
TraesCS6A01G187900.2	Wheat	cytosol	66.96	68.36
HORVU6Hr1G042080.7	Barley	cytosol	66.08	67.26
KXG29836	Sorghum	cytosol, mitochondrion, plastid	66.08	67.26
Zm00001d016299_P001	Maize	cytosol, mitochondrion, plastid	65.2	66.57
GSMUA_Achr10P...	Banana	cytosol	67.25	66.28
TraesCS7A01G061900.2	Wheat	cytosol	64.33	65.67
TraesCS7D01G056700.1	Wheat	cytosol	65.79	65.6
GSMUA_Achr7P09310_001	Banana	cytosol	61.7	60.98
TraesCS4A01G428000.1	Wheat	mitochondrion	65.5	58.18
Os02t0226300-00	Rice	cytosol, mitochondrion, plastid	57.31	54.9
PGSC0003DMT400021172	Potato	plastid	53.51	54.46
TraesCS4A01G427000.1	Wheat	mitochondrion	58.77	53.74
PGSC0003DMT400074454	Potato	plastid	19.59	37.43
PGSC0003DMT400000597	Potato	cytosol	34.8	33.52
PGSC0003DMT400049872	Potato	cytosol	34.21	32.96
PGSC0003DMT400062351	Potato	cytosol	30.12	29.26
PGSC0003DMT400030778	Potato	cytosol, peroxisome, plastid	30.12	27.11
PGSC0003DMT400087691	Potato	mitochondrion	12.87	26.35
PGSC0003DMT400053564	Potato	cytosol, nucleus, plastid	30.41	26.13
PGSC0003DMT400023766	Potato	cytosol	24.56	23.73
PGSC0003DMT400004751	Potato	mitochondrion	10.82	23.12
PGSC0003DMT400036927	Potato	cytosol	29.24	20.45
PGSC0003DMT400043297	Potato	cytosol, plastid	25.15	20.43
PGSC0003DMT400016387	Potato	cytosol	25.15	19.86

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:102586177	MapMan:24.2.13	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:Graves_DC	InterPro:IPR018108	InterPro:IPR023395	UniProt:M0ZHJ7
InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	EnsemblPlantsGene:PGSC0003DMG400000342	PGSC:PGSC0003DMG400000342
EnsemblPlants:PGSC0003DMT400000910	PRINTS:PR00926	PRINTS:PR00928	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF245
SUPFAM:SSF103506	TMHMM:TMhelix	UniParc:UPI000294FD4C	RefSeq:XP_006353525.1	:	:

Description

Grave disease carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000342]

Coordinates

chr12:-:3749034..3754347

Molecular Weight (calculated)

37771.1 Da

IEP (calculated)

10.092

GRAVY (calculated)

-0.041

Length

342 amino acids

Sequence
(BLAST)

001: MAKQRDERRE KKEVWDGVIE GMPLFAKELI AGGVAGGFAK SAVAPLERIK ILFQTRQAEY RSLGLIGSFT KIAKTEGTLG FFRGNGASVA RIVPYAALHY
101: MAYEEYRRWI IDGIPGVGKG PILDLVAGSF AGGTAVLFTY PLDLVRTKLA YQVVGSQKLN IQGLVTGEQV YKGIKDCFSK TYKEAGIKGL YRGVAPSLYG
201: IFPYAGLKFY FYETMKSHVP KERKNDITIK LACGSVAGLL GQTFTYPLDV VRRQMQVQRL SASNSHEMKG TADTLVMILR THGWKQLFSG LSLNYLKVVP
301: SVAIGFTVYD MMKAYLRVPS RDDAVVEVVT SNRDSQSSTL HS

Best Arabidopsis Sequence Match ( AT4G26180.1 )
(BLAST)

001: MAEGEEKNGI IDSIPLFAKE LIAGGVTGGI AKTAVAPLER IKILFQTRRD EFKRIGLVGS INKIGKTEGL MGFYRGNGAS VARIVPYAAL HYMAYEEYRR
101: WIIFGFPDTT RGPLLDLVAG SFAGGTAVLF TYPLDLVRTK LAYQVVGSAK TQVKAIPVEQ IIYRGIVDCF SRTYRESGAR GLYRGVAPSL YGIFPYAGLK
201: FYFYEEMKRH VPPEHKQDIS LKLVCGSVAG LLGQTLTYPL DVVRRQMQVE RLYSAVKEET RRGTMQTLFK IAREEGWKQL FSGLSINYLK VVPSVAIGFT
301: VYDIMKLHLR VPPREEPEAE AVTTRKRKVF T

Arabidopsis Description

COAC2Mitochondrial carrier protein CoAc2 [Source:UniProtKB/Swiss-Prot;Acc:F4JU70]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.